View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13966_low_8 (Length: 225)
Name: NF13966_low_8
Description: NF13966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13966_low_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 2 - 143
Target Start/End: Original strand, 28216519 - 28216661
Alignment:
| Q |
2 |
tttcagtagacagatttgagtgatcattgttttacaacactactctttcannnnnnnnnn-aacactattttgtttagtgtcaactatgaagactttaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28216519 |
tttcagtagacagatttgagtgatcattgttttacaacactactctttcacatttttttgtaacactattttgtttagtgtcaactatgaagactttaaa |
28216618 |
T |
|
| Q |
101 |
ccatatgatatgatatttatcttgaagttatcttaatgaaaaa |
143 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28216619 |
ccatatgatatgatatttatcttgaagttatcttaatgaaaaa |
28216661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 2 - 143
Target Start/End: Original strand, 28227371 - 28227513
Alignment:
| Q |
2 |
tttcagtagacagatttgagtgatcattgttttacaacactactctttcannnnnnnnnn-aacactattttgtttagtgtcaactatgaagactttaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28227371 |
tttcagtagacagatttgagtgatcattgttttacaacactactctttcacatttttttgtaacactattttgtttagtgtcaactatgaagactttaaa |
28227470 |
T |
|
| Q |
101 |
ccatatgatatgatatttatcttgaagttatcttaatgaaaaa |
143 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
28227471 |
ccatatgatatgatatttatcttgaagttatcttaattaaaaa |
28227513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 62 - 140
Target Start/End: Complemental strand, 33847568 - 33847495
Alignment:
| Q |
62 |
aacactattttgtttagtgtcaactatgaagactttaaaccatatgatatgatatttatcttgaagttatcttaatgaa |
140 |
Q |
| |
|
|||||||||||||||||||| |||| |||||| ||||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
33847568 |
aacactattttgtttagtgttaactttgaagattttaaaccatatg-----atatttatctggaagttatcttaatgaa |
33847495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University