View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13967_high_2 (Length: 496)
Name: NF13967_high_2
Description: NF13967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13967_high_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 5 - 480
Target Start/End: Complemental strand, 39292727 - 39292250
Alignment:
| Q |
5 |
ggtagattatactttaagtagatgacataatactttataatcgttttgtaacaactctgatgtcgagttttctagaagagaggctagtatgatcattgtt |
104 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
39292727 |
ggtagattatattttaagtagatgacataatactttataatcgttttgtaccaactctcatgtcgagttttctagaagagagactagtatgatcattgtt |
39292628 |
T |
|
| Q |
105 |
cataacatgctaaagtgtacctatacaatattagttctcagctttattttgacaaccccctttcattttcaaagtaacgcattagttttctcttgtnnnn |
204 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39292627 |
cataacatgctaaagtgtacctatacaatgttagttctcagctttattttgacaaccccctttcattttcaaagtaacgcattagttttctcttgtaaaa |
39292528 |
T |
|
| Q |
205 |
nnnn-ctttgaaataaataattaaacaaataannnnnnn-aacaatgcatcatttaagaactcataaaaggaaactttatcttgaaaatataagttaaat |
302 |
Q |
| |
|
|||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39292527 |
aaaaactttgaaataaataattatacaattaattttttttaacaatgcatcatttaagaactcataaaaggaaactttatcttgaaaatataagttaaat |
39292428 |
T |
|
| Q |
303 |
ccttacaaaacagtaattacaccgtttttcaaaatttgtcttttttgtttcttgaacaatgccctaaggaaacttattacgtcacatctcagtcaatatg |
402 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
39292427 |
ccttgcaaagcagtaattacaccgtttttcaaaatttgtcttttttgtttcttaaacaatgccctaaggaaatttgttacgtcacatctcagtcaatatg |
39292328 |
T |
|
| Q |
403 |
agactcacactccatctaacgctcaagattgaacataagtgtgatccaagtggcccaatagtggtgaccacctgatag |
480 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39292327 |
agactcacactccatctaacgctcaagattgaacataagtgtgatccaagtggcccaatagtggtgaccacctgatag |
39292250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 95
Target Start/End: Complemental strand, 8746602 - 8746556
Alignment:
| Q |
49 |
tttgtaacaactctgatgtcgagttttctagaagagaggctagtatg |
95 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||||||| |||| |
|
|
| T |
8746602 |
tttgtaacaactcttatgtcgagttttctaggagagaggctaatatg |
8746556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 86
Target Start/End: Original strand, 6470830 - 6470867
Alignment:
| Q |
49 |
tttgtaacaactctgatgtcgagttttctagaagagag |
86 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
6470830 |
tttgtaacaactcttatgtcgagttttctaggagagag |
6470867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 6750400 - 6750363
Alignment:
| Q |
49 |
tttgtaacaactctgatgtcgagttttctagaagagag |
86 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
6750400 |
tttgtaacaactcttatgtcgagttttctaggagagag |
6750363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University