View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13967_low_1 (Length: 652)

Name: NF13967_low_1
Description: NF13967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13967_low_1
NF13967_low_1
[»] chr4 (1 HSPs)
chr4 (18-637)||(34582354-34582990)


Alignment Details
Target: chr4 (Bit Score: 475; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 18 - 637
Target Start/End: Complemental strand, 34582990 - 34582354
Alignment:
Q  18 catcacataatcatctatcaatgtatatactattctaaacctctcacccgtgacccacc----------gattaacttgagaattaaagtgtaggtcggt 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||          |||||| ||||||||||||||||||||||||    
T  34582990 catcacataatcatctatcaatgtatatactattctaaacctctcacctgtgacccacctcaaacattagattaagttgagaattaaagtgtaggtcggt 34582891  T
Q  108 gggaccatgatttttcctaaatca----------tatgaaggtatgaataattagagaagtatacaatttggcaagtaataaaagacattcccctcnnnn 197  Q
    ||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  34582890 gggaccatgatttttcctaaatcacataatcacttatgaaggtatgaataattagagaagtatacaatttggcaagtaataaaagacattcccctcaaaa 34582791  T
Q  198 nnnnngaaggtaataaaagacattattctaaacctttttaatgaaattcgagttagnnnnnnncgatgggaccatggtcaacctcacctgaccccaaatc 297  Q
          ||| |||||||||||||||||||||||||||  |||||||||||||||||       |||||||||||||||||||| ||||||||||||||||    
T  34582790 agaaaaaag-taataaaagacattattctaaaccttt--aatgaaattcgagttagaaaaaaacgatgggaccatggtcaaccccacctgaccccaaatc 34582694  T
Q  298 gttttgcctccatttctcgtcaattacattacccgcctttacgaagtcagaaacactgaaaccgttactatataaacccaattcgaaaccacaatgctca 397  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  34582693 gttttgcctccatttctcgtcaattacattacccgcctttacgaagtcagaaacactgaagccgttactatataaacccaattcgaaaccacaatgctca 34582594  T
Q  398 ttttcactgtttcctcttcaacctctcagaactttctcgttcattttcgtttgaagcaaacggtgaattttctcgcatctcttttctcatcgcaaccgca 497  Q
    ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34582593 tttccactgtttccttttcaacctctcagaactttctcgttcattttcgtttgaagcaaacggtgaattttctcgcatctcttttctcatcgcaaccgca 34582494  T
Q  498 tcaaaaccctatctccgtcgatcatcactctcattcgcttgctgaaatcgcaaatcgcttccatctcctcaaaatctagatcatacggtatctgattcca 597  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34582493 tcaaaaccctatctccgtcgatcatcactctcattcgcttgctgaaatcgcaaatcgcttccatctcctcaaaatctagatcatacggtatctgattcca 34582394  T
Q  598 ttacgtttcttcgatctgtaaatcacgcatttcctctctg 637  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  34582393 ttacgtttcttcgatctgtaaatcacgcatttcctctctg 34582354  T

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