View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13967_low_3 (Length: 453)
Name: NF13967_low_3
Description: NF13967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13967_low_3 |
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| [»] scaffold0163 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 15 - 257
Target Start/End: Original strand, 7725203 - 7725445
Alignment:
| Q |
15 |
aatagctatctatctatgtatagtccagccctatcatatcagagatagaaatatactattacactgtatgaaaccaaaacatcagcaagttggagtcaat |
114 |
Q |
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| T |
7725203 |
aatagctatctatctatgtatagtccagccctatcatatcagagatagaaatatactattacactgtatgaaaccaaaacatcagcaagttggagtcaat |
7725302 |
T |
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| Q |
115 |
cctatctcatcaaattatacaatacttttgaagatttatggttgtctctcatgtgatatctaacacatcaaagtaacaagactcaacatgactaatatca |
214 |
Q |
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| T |
7725303 |
cctatttcatcaaattatacaatacttttgaagatttatggttgtctctcatgtgatatctaacacatcaaagtaacaagactcaacatgactaatatca |
7725402 |
T |
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| Q |
215 |
aagaaatcaaaactgcatgtgtagtgtcttcatagagtaagaa |
257 |
Q |
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| T |
7725403 |
aagaaatcaaaactgcatgtgtagtgtcttcatagagtaagaa |
7725445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 300 - 434
Target Start/End: Original strand, 7725594 - 7725726
Alignment:
| Q |
300 |
ataatggcaagatgtatgaacaagagtgaaagcttc-tgcattttaata-ttacaatttacaaacactctgccatnnnnnnnnnnnnnntgaatgcaata |
397 |
Q |
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| T |
7725594 |
ataatggtaagatgtatgaacaagagtgaaagcttcttgcatttttatatttacaatttacaaacactctgccat----aaaaaaaaattgaatgcaata |
7725689 |
T |
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| Q |
398 |
atgataactatcatctatcaaccatgatctatgaagt |
434 |
Q |
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| T |
7725690 |
atgataactatcatttatcaaccatgatctatgaagt |
7725726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 300 - 372
Target Start/End: Original strand, 7736200 - 7736273
Alignment:
| Q |
300 |
ataatggcaagatgtatgaacaagagtgaaagcttc-tgcattttaatattacaatttacaaacactctgccat |
372 |
Q |
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| T |
7736200 |
ataatggcaagatgtatgaacaagagtgaatgtttcttgcattttaatattacaatttacaagtactctgccat |
7736273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0163 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0163
Description:
Target: scaffold0163; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 156 - 195
Target Start/End: Original strand, 736 - 775
Alignment:
| Q |
156 |
ttgtctctcatgtgatatctaacacatcaaagtaacaaga |
195 |
Q |
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| T |
736 |
ttgtctttcatgtgatatctaacacatcaaagtaacaaga |
775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 156 - 195
Target Start/End: Original strand, 15098119 - 15098158
Alignment:
| Q |
156 |
ttgtctctcatgtgatatctaacacatcaaagtaacaaga |
195 |
Q |
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| T |
15098119 |
ttgtctttcatgtgatatctaacacatcaaagtaacaaga |
15098158 |
T |
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