View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13967_low_5 (Length: 439)
Name: NF13967_low_5
Description: NF13967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13967_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 44 - 422
Target Start/End: Original strand, 37718781 - 37719157
Alignment:
| Q |
44 |
taagaatgaggcttgcctcaagtaagttcttgtgatctttttatcgaacaattataatgcaaagtagatttcatcaaactgaatgactcatagttgatac |
143 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37718781 |
taagaatgaggcttgcctcaagtaagttcttgtgatctttttatcgaacaattataatgcaaagtagatttcatcaaactgaatgactcatagttgatac |
37718880 |
T |
|
| Q |
144 |
taaatttcaaacaactaaaaatatcaaattcaatttctataattttgaaacccattctatgactgattccgtataggtttgactactactgactacaatt |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
37718881 |
taaatttcaaacaactaaaaatatcaaattcaatttctataattttgaaacccattctatgactgattccgtacaggtttgactactactgactacaatt |
37718980 |
T |
|
| Q |
244 |
ttgaaatccctctatggcttcactataaaatttgtaaacggtcactctatcagacacaaatcaaatcgaaattctaacatcaacattaacaaaatctaca |
343 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37718981 |
ttgaaatccctctatggc--cactataaaatttgtaaacggtcactctatcagacacaaatcaaatcgaaattctaacatcaacattaacaaaatctaca |
37719078 |
T |
|
| Q |
344 |
ccagaatcaagattatcaccaattttataatgaaaacctagaataagaccggaagtaataaattttatagtgataatct |
422 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37719079 |
ccagaatcaagattatcaccaattttataatgaaaacctagaataagaccggaagtaataaattttatagtgataatct |
37719157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 262 - 411
Target Start/End: Original strand, 30440415 - 30440564
Alignment:
| Q |
262 |
ttcactataa-aatttgtaaacggtcactctatcagacacaaatcaaatcgaaattctaacatcaacattaacaaaatctacaccagaatcaagattatc |
360 |
Q |
| |
|
|||||||||| |||||||| ||| |||||||||||||||||||||| ||||||||| |||| ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
30440415 |
ttcactataagaatttgtatacgatcactctatcagacacaaatcagatcgaaattataac-tcaacatcaacaaaatctacaccagaatcaagattatc |
30440513 |
T |
|
| Q |
361 |
accaattttataatgaaaacctagaataagaccggaagtaataaattttat |
411 |
Q |
| |
|
|||||| ||||| ||||||||||||| |||||| || ||||||| |||||| |
|
|
| T |
30440514 |
accaatgttatagtgaaaacctagaaaaagaccagatgtaataagttttat |
30440564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 44 - 422
Target Start/End: Complemental strand, 4436379 - 4436001
Alignment:
| Q |
44 |
taagaatgaggcttgcctcaagtaagttcttgtgatctttttatcgaacaattataatgcaaagtagatttcatcaaactgaatgactcatagttgatac |
143 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4436379 |
taagaatgaggattgcctcaagtaagttcttgtgatctttttatcgaacaattataatgcaaagtagatttcatcaaactgaatgactcatagttgatac |
4436280 |
T |
|
| Q |
144 |
taaatttcaaacaactaaaaatatcaaattcaatttctataattttgaaacccattctatgactgattccgtataggtttgactactactgactacaatt |
243 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
4436279 |
taaatttcaaacaactaataatatcaaattcaatttctataattttgaaacccattctatgactgattccgtacaggtttgactactactaactacaatt |
4436180 |
T |
|
| Q |
244 |
ttgaaatccctctatggcttcactataaaatttgtaaacggtcactctatcagacacaaatcaaatcgaaattctaacatcaacattaacaaaatctaca |
343 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
4436179 |
ttgaaatccctctatggcttcactataaaatttgtaaacggtcactctatcagacacaaagcaaatcaaaattctaacatcaacattaacaaaatctaca |
4436080 |
T |
|
| Q |
344 |
ccagaatcaagattatcaccaattttataatgaaaacctagaataagaccggaagtaataaattttatagtgataatct |
422 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4436079 |
tcagaatcaagattatcaccaattttataatgaaaacctagaataagaccggaagtaataaattttatagtgataatct |
4436001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 73 - 422
Target Start/End: Complemental strand, 4092582 - 4092223
Alignment:
| Q |
73 |
ttgtgatctttttatcgaacaattataatgcaaagtagatttcatcaaactgaatgactcatagttgatactaaatttcaaacaactaaaaatatcaaat |
172 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |
|
|
| T |
4092582 |
ttgtgatctttttatcgaacaattagaatgcaaagtagatttcatcaaactgaatgactcatggttgatactaaatttcaaacaactaaaaatatcacat |
4092483 |
T |
|
| Q |
173 |
tcaatttctataattttgaaacccattctatgactgattcc-gtataggtttgactactactgactacaattttgaaatccctctatggc---------- |
261 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||| ||| ||| |||||||||||||| ||||||||||||||||| ||| ||||||| |
|
|
| T |
4092482 |
tcaatttctataattttgaaaccccttctatggctgactccagtacaggtttgactactattgactacaattttgaaacccccctatggctgattccagg |
4092383 |
T |
|
| Q |
262 |
-ttcactataaaatttgtaaacggtcactctatcagacacaaatcaaatcgaaattctaacatcaacattaacaaaatctacaccagaatcaagattatc |
360 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
4092382 |
tttcactataaaatttgtatacggtca--ctatcaaacacaaatcaaatcgaaattctaacatcaatattaacaaaatctacaccagaatcaagattatc |
4092285 |
T |
|
| Q |
361 |
accaattttataatgaaaacctagaataagaccggaagtaataaattttatagtgataatct |
422 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| || ||||||||||||||||||| ||||| |
|
|
| T |
4092284 |
accaatttcataatgaaaacctagaataagaccagatgtaataaattttatagtgaaaatct |
4092223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 44 - 422
Target Start/End: Original strand, 46594459 - 46594837
Alignment:
| Q |
44 |
taagaatgaggcttgcctcaagtaagttcttgtgatctttttatcgaacaattataatgcaaagtagatttcatcaaactgaatgactcatagttgatac |
143 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46594459 |
taagaatgaggattgcctcaagtaagttcttgtgatctttttatcgaacaattataatgcaaagtagatttcatcaaactgaatgactcatagttgatac |
46594558 |
T |
|
| Q |
144 |
taaatttcaaacaactaaaaatatcaaattcaatttctataattttgaaacccattctatgactgattccgtataggtttgactactactgactacaatt |
243 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
46594559 |
taaatttcaaacaactaataatatcaaattcaatttctataattttgaaacccattctatgactgattccgtacaggtttgactactactaactacaatt |
46594658 |
T |
|
| Q |
244 |
ttgaaatccctctatggcttcactataaaatttgtaaacggtcactctatcagacacaaatcaaatcgaaattctaacatcaacattaacaaaatctaca |
343 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
46594659 |
ttgaaatccctctatggcttcactataaaatttgtaaacggtcactctatcagacacaaagcaaatcaaaattctaacatcaacattaacaaaatctaca |
46594758 |
T |
|
| Q |
344 |
ccagaatcaagattatcaccaattttataatgaaaacctagaataagaccggaagtaataaattttatagtgataatct |
422 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
46594759 |
ccagaatcaagattatcaccaattttataatgaaaacctagaataagaccggaagtaatagattttatagtgataatct |
46594837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 59 - 149
Target Start/End: Complemental strand, 25490221 - 25490131
Alignment:
| Q |
59 |
cctcaagtaagttcttgtgatctttttatcgaacaattataatgcaaagtagatttcatcaaactgaatgactcatagttgatactaaatt |
149 |
Q |
| |
|
|||||| | |||||| |||||| ||||||| ||| |||||||||||||||| |||||||||| ||||||||| || |||||||| |||| |
|
|
| T |
25490221 |
cctcaacttagttctagtgatccttttatcaaacggttataatgcaaagtagctttcatcaaagtgaatgacttgtaattgatactgaatt |
25490131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 45 - 422
Target Start/End: Complemental strand, 47521879 - 47521485
Alignment:
| Q |
45 |
aagaatgaggcttgcctcaagtaagttcttgtgatctttttatcgaacaattataatgcaaagtagatttcatcaaactgaatgactcatagttgatact |
144 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47521879 |
aagaatgaggcttgcctcaagtaagttcttgtgatttttttatcgaacaattagaatgcaaagtagatttcatcaaactgaatgactcatagttgatact |
47521780 |
T |
|
| Q |
145 |
aaatttcaaacaactaaaaatatcaaattcaatttctataattttgaaacccattctatgactgattcc-gtataggtttgactactactgactacaatt |
243 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
47521779 |
aaatttcaaacaactaaaaatatcacattcaatttctataattttgaaaccccttctatggttgattccagtacaggtttgactactactgactacaatt |
47521680 |
T |
|
| Q |
244 |
ttgaaatccctctatggc----------------ttcactataaaatttgtaaacggtcactctatcagacacaaatcaaatcgaaattctaacatcaac |
327 |
Q |
| |
|
|||||| ||||||||||| || ||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
47521679 |
ttgaaacccctctatggctgattccagtacaggtttaactataaaatttgtatacggtcactctatcagacacgaatcaaatcaaaattctaacatcaac |
47521580 |
T |
|
| Q |
328 |
attaacaaaatctacaccagaatcaagattatcaccaattttataatgaaaacctagaataagaccggaagtaataaattttatagtgataatct |
422 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||| |
|
|
| T |
47521579 |
attaacaaaatctacaccagaatcaagattatcaccaattttataatgaaaacctagaataagaccatatgtaataaattttatagtgaaaatct |
47521485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 151; Significance: 1e-79; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 44 - 233
Target Start/End: Complemental strand, 26496597 - 26496407
Alignment:
| Q |
44 |
taagaatgaggcttgcctcaagtaagttcttgtgatctttttatcgaacaattataatgcaaagtagatttcatcaaactgaatgactcatagttgatac |
143 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26496597 |
taagaatgagacttgcctcaagtaagttcttgtgatctttttatagaacaattaaaatgcaaagtagatttcatcaaactgaatgactcatagttgatac |
26496498 |
T |
|
| Q |
144 |
taaatttcaaacaactaaaaatatcaaattcaatttctataattttgaaacccattctatgactgattcc-gtataggtttgactactact |
233 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||| |||||||| ||| |||||||||||||||| |
|
|
| T |
26496497 |
taaatttcaaacaactaaaaatatcacattcaatttctacaattttgaaacccattcaatggctgattccagtacaggtttgactactact |
26496407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 343 - 393
Target Start/End: Complemental strand, 26496346 - 26496296
Alignment:
| Q |
343 |
accagaatcaagattatcaccaattttataatgaaaacctagaataagacc |
393 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
26496346 |
accagaatcaagattatccccaattttatagtgaaaacctagaataagacc |
26496296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 271 - 311
Target Start/End: Complemental strand, 26496391 - 26496351
Alignment:
| Q |
271 |
aaatttgtaaacggtcactctatcagacacaaatcaaatcg |
311 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
26496391 |
aaatttgtatacggtcactctatcagacacaaatcaaatcg |
26496351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 56 - 96
Target Start/End: Original strand, 38016318 - 38016358
Alignment:
| Q |
56 |
ttgcctcaagtaagttcttgtgatctttttatcgaacaatt |
96 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
38016318 |
ttgcctcaagtaagttcttgtgatctttttattgaacaatt |
38016358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University