View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13967_low_6 (Length: 385)
Name: NF13967_low_6
Description: NF13967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13967_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 14970039 - 14970412
Alignment:
| Q |
1 |
cttactaacaagtacacctattttacatttt-aacgatttcaaattatgaaactattcttcgaatatttcaatttataatacattgaatacataaaattt |
99 |
Q |
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| T |
14970039 |
cttactaacgagtacccctattttacatttttaacgatttcaaattatgaaactattcttcgaatatttcaatttataatacattggatacataaaattt |
14970138 |
T |
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| Q |
100 |
cataaaaagttaatgttaaagtccttaaaaatgcttgagatccttacttgcatttcccaataaattataaccaaaaactcatgcagcataacttataaga |
199 |
Q |
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| T |
14970139 |
cataaaaagttaatgttaaagtcctcaaaaatgcttgagatccttacttgaatttcccaataaattataaccaaaaactcatgcagcataacttataaga |
14970238 |
T |
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| Q |
200 |
atatcggattccttaagtcattaattcaatagccccctttccatcagattgattgtgctattcatgatccaatcaacccctttttgcgagcataggcaac |
299 |
Q |
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| T |
14970239 |
ttataggaatccttaagtcattaattcaatagccccctttccatcagattgattgtactattcatgatccaatcaacccctttttgcgagcataggcaac |
14970338 |
T |
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| Q |
300 |
tatgattagaaatatagaaatggaaaaaattcctggaaaaataaccacctgccaatagaaaagatataccatat |
373 |
Q |
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| T |
14970339 |
tatgattagaaatatagaaatggaaaaaaatcctggaaaaataaccacctgccaatagaaaagatataccatat |
14970412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 245 - 361
Target Start/End: Original strand, 14987388 - 14987504
Alignment:
| Q |
245 |
agattgattgtgctattcatgatccaatcaacccctttttgcgagcataggcaactatgattagaaatatagaaatggaaaaaattcctggaaaaataac |
344 |
Q |
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| T |
14987388 |
agattgattcagctattcatgatccaaccagcccttttttgcgagcagaggcaactatggtgagaaatatagatatggaaaaaattcctgtaaaaataac |
14987487 |
T |
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| Q |
345 |
cacctgccaatagaaaa |
361 |
Q |
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| T |
14987488 |
cacctgccaataaaaaa |
14987504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 107
Target Start/End: Original strand, 2120488 - 2120533
Alignment:
| Q |
62 |
aatatttcaatttataatacattgaatacataaaatttcataaaaa |
107 |
Q |
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| T |
2120488 |
aatatttcaatttttaatatattaattacataaaatttcataaaaa |
2120533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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