View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13967_low_9 (Length: 274)
Name: NF13967_low_9
Description: NF13967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13967_low_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 47713813 - 47713559
Alignment:
| Q |
1 |
aacaaaacttccatcgatcaaatggtaacaaatttcaacacccttcatacaaaccaaaacccaccaatgactttaacagaaaacatgtcaccaacatatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
47713813 |
aacaaaacttccatcgatcaaatggtaacaaatttcaacacccttcatacaaaccaaaacccaccaatgactctaacagaaaacatgtcaccaacatatc |
47713714 |
T |
|
| Q |
101 |
tcactacttgcaacccatgtcttgacttcttcttccatgttgtccccgacannnnnnnngaaactctcctccgacgacttcaattagcatggtcctataa |
200 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47713713 |
tcactactggcaacccatgtcttgacttcttcttccatgttgtccccgacactccccctgaaactctcctccgacgacttcaattagcatggtcctataa |
47713614 |
T |
|
| Q |
201 |
cccactcaccacccttaaactcgtctgtaacctccgcggcgtccgcggtaccggc |
255 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
47713613 |
cccactcaccacccttaaactcgtctgtaacctccgcggcgttcgcggtaccggc |
47713559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 185 - 255
Target Start/End: Complemental strand, 15835815 - 15835745
Alignment:
| Q |
185 |
tagcatggtcctataacccactcaccacccttaaactcgtctgtaacctccgcggcgtccgcggtaccggc |
255 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||||||||||||||||| || || || ||||||||| |
|
|
| T |
15835815 |
tagcatggtcccataacccactcaccaccctcaaactcgtctgtaacctccgtggtgttcgtggtaccggc |
15835745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 149
Target Start/End: Complemental strand, 15835918 - 15835851
Alignment:
| Q |
82 |
aacatgtcaccaacatatctcactacttgcaacccatgtcttgacttcttcttccatgttgtccccga |
149 |
Q |
| |
|
||||||||||| |||| |||| | || | |||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
15835918 |
aacatgtcaccgacatttctctccaccggtaacccatgccttgatttcttcttccatgttgtccccga |
15835851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 190 - 254
Target Start/End: Complemental strand, 19796572 - 19796508
Alignment:
| Q |
190 |
tggtcctataacccactcaccacccttaaactcgtctgtaacctccgcggcgtccgcggtaccgg |
254 |
Q |
| |
|
|||||| | ||||| |||||| |||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
19796572 |
tggtcccaaaaccctctcaccgccctcaaactcgtctgtaacctccgtggcgtccgcggtaccgg |
19796508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University