View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13968_high_1 (Length: 580)
Name: NF13968_high_1
Description: NF13968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13968_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 1 - 562
Target Start/End: Original strand, 50314042 - 50314620
Alignment:
| Q |
1 |
atgacaagctcgctggagaagataacaaatgattattaaagcaaagggaaaagaaaaagcgaggttctttggattaggagtgatgtactttggatatgtg |
100 |
Q |
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| T |
50314042 |
atgacaagctcgctggagaagataacaaatgattattaaagcaaagggaaaagaaaaagcgaggttctttggattaggagtgatgtactttggatatgtg |
50314141 |
T |
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| Q |
101 |
aagtttatgattg-tgtagtttattggtataatgttttagagctctttacattgttgctttcttgggtgtcatggcctttgcattttgttgttgatagca |
199 |
Q |
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| T |
50314142 |
aagtttatgattggtgtagtttattggcataatgttttagagctctttacattgttgctttcttgggtgtcatggcctttgcattttgttgttgatacca |
50314241 |
T |
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| Q |
200 |
tattattgattcctttataattaagtatttaatgtcacacgattctttctcaaattttgcatcannnnnnnnnnnnnnnnnatctgccactaatctctat |
299 |
Q |
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| T |
50314242 |
tattattgattcctttataattaagtatttaatgtcacacgattctttctcaaattttgcatcattttttgtttcttttttatctgccactaatctctat |
50314341 |
T |
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| Q |
300 |
gtgttgggaaaagtaaaagagtttgtaatgacc-tttaagtttttgggaagataatt---------------gcaagagtatgagtcaagaaggaggttc |
383 |
Q |
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| T |
50314342 |
gtgttgggaaaagtaaaagagtttgtaatgaccttttaagtttttgggaagataattgcaaattaattaatggcaagagtatgactcaagaaggatgttc |
50314441 |
T |
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| Q |
384 |
atgtgaattttttcactcatttactagataaaacatcgatacataggcatgtaaatattatggtgtgcgaaaggtataatgaaaatatacatgtgtgaat |
483 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||| |
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| T |
50314442 |
atgtgaattttttcactcatctactagataaaacatcgatacgtaggcatgtaaatattatggtgtgcgaaaggtagaatataaacatacatgtgtgaat |
50314541 |
T |
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| Q |
484 |
ttgacaggagcttcatcgcctgtgggattagaggttggagattttaaggtcggacaaacaaccctaagagctgcataaa |
562 |
Q |
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| T |
50314542 |
ttgacaggagcttcatcgcctgtgggattagaggtcagagattttatgatcggacaaacaactctaagagctgcataaa |
50314620 |
T |
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