View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13968_high_11 (Length: 372)
Name: NF13968_high_11
Description: NF13968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13968_high_11 |
 | |
|
| [»] chr7 (3 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 3 - 372
Target Start/End: Complemental strand, 49058288 - 49057920
Alignment:
| Q |
3 |
atgaaacggtatgagcttgatattgattgcataataaggggtgaagataaccgaacaacacttatgattaagaacattcctaacaagtaagctgtattan |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49058288 |
atgaaacggtatgagcttgatattgattgcataataaggggtgaagataaccgaacaacacttatgattaagaacattcctaacaagtaagctgtattat |
49058189 |
T |
|
| Q |
103 |
nnnnnnnnnnnnnnnnatatattctctaatgcnnnnnnnttgtatattcatttggtatgttttggattatgatttaaataannnnnnnngtaaatctcat |
202 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
49058188 |
tttttattttttttt-atatattctctaatgcaaaaaaattgtatattcatttggtatgttttggattatgatttaaataattttttttgtaaatctcat |
49058090 |
T |
|
| Q |
203 |
ttctcttgactatgacttgttgcaggtatacttctgagatgttgttggctgcaattgatgaacaccatgaaagaacttatgactttgtgtatctaccaat |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
49058089 |
ttctcttgactatgacttgttgcaggtatacttctgagatgttgttggctgcaattgatgaacgccattaaagaacttatgactttgtgtatctaccaat |
49057990 |
T |
|
| Q |
303 |
tgatttcagagtacgtgttttctatcttttttatctttaaatgatacatttattttggaactccttttat |
372 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
49057989 |
tgatttcagagtacgtgttttttatcttttttatctttaaatgtttaatttattttggaactccttttat |
49057920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 3 - 93
Target Start/End: Original strand, 6554282 - 6554372
Alignment:
| Q |
3 |
atgaaacggtatgagcttgatattgattgcataataaggggtgaagataaccgaacaacacttatgattaagaacattcctaacaagtaag |
93 |
Q |
| |
|
|||||||| ||||| ||||||||||| ||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6554282 |
atgaaacgatatgaacttgatattgactgcattaaaaggggcgaagataaccgaacaacacttatgattaagaacattcctaacaagtaag |
6554372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 142 - 315
Target Start/End: Original strand, 6554411 - 6554588
Alignment:
| Q |
142 |
ttgtatattcatttggtatgttttggattatgatttaaataannnnnnnngtaaatctcatttctcttgactatgacttg------ttgcaggtatactt |
235 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| | | ||||||||||||||||||| || || || ||||||||||| |
|
|
| T |
6554411 |
ttgtatattcatttggtatgttttagattatgatttaaatcattttctta--acatctcatttctcttgactaagattttgatcatttacaggtatactt |
6554508 |
T |
|
| Q |
236 |
ctgagatgttgttggctgcaattgatgaacaccatgaaagaacttatgactttgtgtatctaccaattgatttcagagta |
315 |
Q |
| |
|
| ||||| ||||||||||||| |||||||||||| || || ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
6554509 |
ccaagatgctgttggctgcaatcgatgaacaccataaaggagcttatgattttgtgtatctaccaattgatttcagagta |
6554588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University