View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13968_high_13 (Length: 356)
Name: NF13968_high_13
Description: NF13968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13968_high_13 |
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| [»] scaffold0457 (1 HSPs) |
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| [»] scaffold0045 (6 HSPs) |
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Alignment Details
Target: scaffold0457 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: scaffold0457
Description:
Target: scaffold0457; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 10 - 342
Target Start/End: Complemental strand, 5215 - 4882
Alignment:
| Q |
10 |
attattctttagcaaggagccaggtccttttctacattccttggataaactctatcaagacttgcttctaggagtgagagcctatc-aattaacattcct |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
5215 |
attattctttagcaaggagccaggtccttttctacattccttggataaactctatcaagacttgcttctaggagtgagagcctatccaattaacattcct |
5116 |
T |
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| Q |
109 |
ggttttgcataccaccatgctcttcaggttccattaaactcccatttaattaatcatcaacaagttttgcttcaattaactccttgaatctatattattt |
208 |
Q |
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| T |
5115 |
ggttttgcataccaccatgctcttcaggttccattaaactcccatttaattaatcatcaacaagttttgcttcaattaactccttgaatctatattattt |
5016 |
T |
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| Q |
209 |
ttaaaattaacacatttaattaaaatttcagtgtagaagaaagcttgatgactttttctggattgaattagataacagaaaaaataaagataaggtggaa |
308 |
Q |
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| T |
5015 |
ttaaaattaacacatttaattaaaatttcagtgtagaagaaagcttgatgactttttctggattgaaatagataacagaaaaaataaagataaggtggaa |
4916 |
T |
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| Q |
309 |
acaattgatctaatggatgggttgatgcaaattg |
342 |
Q |
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| T |
4915 |
acaattgatctaatggatgggttgatgcaaattg |
4882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 157; Significance: 2e-83; HSPs: 6)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 10 - 201
Target Start/End: Original strand, 24953 - 25145
Alignment:
| Q |
10 |
attattctttagcaaggagccaggtccttttctacattccttggataaactctatcaagacttgcttctaggagtgagagcctatc-aattaacattcct |
108 |
Q |
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| T |
24953 |
attattctttagcaaagagccaggcccttttctaaattccttggataaactctatcaagacttgcttctaggagtgagagcctatccaattaacattcct |
25052 |
T |
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| Q |
109 |
ggttttgcataccaccatgctcttcaggttccattaaactcccatttaattaatcatcaacaagttttgcttcaattaactccttgaatctat |
201 |
Q |
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| T |
25053 |
ggttttgcataccaccatgctcttcaggttcgattaaactcccattccattaattatcaacaagttttgcttcaattaactccttgaatctat |
25145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 216 - 342
Target Start/End: Original strand, 25216 - 25342
Alignment:
| Q |
216 |
taacacatttaattaaaatttcagtgtagaagaaagcttgatgactttttctggattgaattagataacagaaaaaataaagataaggtggaaacaattg |
315 |
Q |
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|||||||| || ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
25216 |
taacacatgtacttaaaatttcagtgtagaagaaagcttgatgactttttcgggatggaattagataacagaaagaataaagataaggtggaaacaattg |
25315 |
T |
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| Q |
316 |
atctaatggatgggttgatgcaaattg |
342 |
Q |
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| T |
25316 |
atctaatggatgggttgatgcaaattg |
25342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 21 - 138
Target Start/End: Original strand, 31942 - 32060
Alignment:
| Q |
21 |
gcaaggagccaggtccttttctacattccttggataaactctatcaagacttgcttctaggagtgagagcctat-caattaacattcctggttttgcata |
119 |
Q |
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||||||||||||| ||||||||| ||||||||||||| |||||||||| |||||||| ||| |||||||||||| || |||||||||||||||||||||| |
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| T |
31942 |
gcaaggagccaggcccttttctaaattccttggataagctctatcaaggcttgcttccaggtgtgagagcctatccacttaacattcctggttttgcata |
32041 |
T |
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| Q |
120 |
ccaccatgctcttcaggtt |
138 |
Q |
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| T |
32042 |
ccaccatgctcttcaggtt |
32060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 10 - 139
Target Start/End: Original strand, 39583 - 39713
Alignment:
| Q |
10 |
attattctttagcaaggagccaggtccttttctacattccttggataaactctatcaagacttgcttctaggagtgagagcctatcaa-ttaacattcct |
108 |
Q |
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||||||||| |||||||| ||||| |||||| || ||||||||||||| |||||| ||| | || ||| |||| | ||||||||| | |||| |||||| |
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| T |
39583 |
attattcttaagcaaggaaccaggcccttttttaaattccttggataagctctatgaaggcatggttccaggactacgagcctatccacttaatattcct |
39682 |
T |
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| Q |
109 |
ggttttgcataccaccatgctcttcaggttc |
139 |
Q |
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| T |
39683 |
ggttttgcataccaccatgctcttaaggttc |
39713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 230 - 342
Target Start/End: Original strand, 32440 - 32552
Alignment:
| Q |
230 |
aaaatttcagtgtagaagaaagcttgatgactttttctggattgaattagataacagaaaaaataaagataaggtggaaacaattgatctaatggatggg |
329 |
Q |
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| T |
32440 |
aaaatttcagtgtagaagaaagttggaggacatcttttggatggaattagagaaaagaaaagctgaaaataaggttgaaacaagtgatctaatggatggg |
32539 |
T |
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| Q |
330 |
ttgatgcaaattg |
342 |
Q |
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| T |
32540 |
ttgatgcaaattg |
32552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 228 - 342
Target Start/End: Original strand, 39822 - 39939
Alignment:
| Q |
228 |
ttaaaatttcagtgtagaagaaagcttgatgactttttctggattgaattagataacagaaaaaataaagataaggtggaa---acaattgatctaatgg |
324 |
Q |
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||||||||| ||||||||||||||||||| ||| |||| ||||| || |||| ||| ||||| ||| || |||||||| || |||| ||||||||||| |
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| T |
39822 |
ttaaaattttagtgtagaagaaagcttgaggacattttttggatggagttaggtaaaagaaagaatgaaaataaggtgaaaagtacaagtgatctaatgg |
39921 |
T |
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| Q |
325 |
atgggttgatgcaaattg |
342 |
Q |
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|||||||||||||||||| |
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| T |
39922 |
atgggttgatgcaaattg |
39939 |
T |
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