View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13968_high_20 (Length: 283)
Name: NF13968_high_20
Description: NF13968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13968_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 133; Significance: 3e-69; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 123 - 267
Target Start/End: Complemental strand, 27444546 - 27444402
Alignment:
| Q |
123 |
tccaccaccaccagaaccagtagctccaccaaatgaagtaataatcaaccctccaccacctcagaagaacaaatttccggttgcaagattttttggcata |
222 |
Q |
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| T |
27444546 |
tccaccaccaccagaaccagtagctccatcagatgaagtaataatcaaccgtccaccacctcagaagaacaaatttccggttgcaagattttttggcata |
27444447 |
T |
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| Q |
223 |
atttctggtattgtttttggggtcgcctgcttaatggtagttgca |
267 |
Q |
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| T |
27444446 |
atttctggtattgtttttggggtcgcctgcttaatggtagttgca |
27444402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 18 - 125
Target Start/End: Complemental strand, 27444588 - 27444469
Alignment:
| Q |
18 |
accattagcattcaacccatatgtaaacattacatatgaacctcc------accagaaccagtagcttcatcagttgaagta------aaccgtccacca |
105 |
Q |
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| T |
27444588 |
accattagcattcaacccatatgtaaacattacatatgaacctccaccaccaccagaaccagtagctccatcagatgaagtaataatcaaccgtccacca |
27444489 |
T |
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| Q |
106 |
cctcagaagaagaaatttcc |
125 |
Q |
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| T |
27444488 |
cctcagaagaacaaatttcc |
27444469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 135
Target Start/End: Complemental strand, 27444627 - 27444591
Alignment:
| Q |
99 |
tccaccacctcagaagaagaaatttccaccaccacca |
135 |
Q |
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| T |
27444627 |
tccaccacctcagaagaacaaatttccacctccacca |
27444591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 200
Target Start/End: Complemental strand, 27444629 - 27444601
Alignment:
| Q |
172 |
cctccaccacctcagaagaacaaatttcc |
200 |
Q |
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| T |
27444629 |
cctccaccacctcagaagaacaaatttcc |
27444601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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