View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13968_high_24 (Length: 238)
Name: NF13968_high_24
Description: NF13968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13968_high_24 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 6220112 - 6220333
Alignment:
| Q |
18 |
ctaatgatagaccataaaatgaaaaatgtttcaacattaaaagcaatttataaggacaataacggtaatagagaaaaagatgttattgtgtcagacaaat |
117 |
Q |
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| T |
6220112 |
ctaatgatagaccataaaatgaaaaatgtttcaacattaaaagcaatttataaggacaataacggtaatagagaaaaagatgttattgtgtcagacaaat |
6220211 |
T |
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| Q |
118 |
atatactagaattgattctagttgccctagaatctccaaatacgagcttgattctatagcgcaaaagcacttc-gtcnnnnnnngcaaccaaacaccgtt |
216 |
Q |
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| T |
6220212 |
atatactagaattgattctagttgccctagaatctccaaatacgagcttgattctatagcgcaaaagcacttctttttttttttgcacccaaacaccgtt |
6220311 |
T |
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| Q |
217 |
ttaaaaacaatatatcacgttc |
238 |
Q |
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| T |
6220312 |
ttaaaaacaatatatcacgttc |
6220333 |
T |
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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 24606846 - 24606905
Alignment:
| Q |
19 |
taatgatagaccataaaatgaaaaatgtttcaacattaaaagcaatttataaggacaataa |
79 |
Q |
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| T |
24606846 |
taatgatggaccataaaatgaaaa-tgtttcatcaataaaagcaatttataacgacaataa |
24606905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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