View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13968_high_7 (Length: 403)
Name: NF13968_high_7
Description: NF13968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13968_high_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 387
Target Start/End: Complemental strand, 28280896 - 28280496
Alignment:
| Q |
1 |
ggagccatcggttttcatgtccttggaagcatgatcaggtttggaagatgaagaagccattttctttactgttattcacaaaataaagcttgatttgaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
28280896 |
ggagccatcggttttcatgtccttggaagcatgatcaggtttggaagatgaagaagccattttctttactgttattcacaaaacaaagcttgatttgaaa |
28280797 |
T |
|
| Q |
101 |
tggtgagtgagaatgtatgtgtagcgggaatgtatgtaaagc-----------------tgagtagtaacttactcataaccgtttctgttagaggtttt |
183 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28280796 |
tggtgagtgagaatgtatgtgtagcgggaatgtatgtaaagcatctatatataaataagtgagtagtaacttactcataaccgtttctgttagaggtttt |
28280697 |
T |
|
| Q |
184 |
gtgacagctgtcaaacttagttacttgacagttgacagctgtgtgattaaattacttaaagtattgtgattannnnnnnnngttagaaaatgaatgagag |
283 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
28280696 |
gtgacagctgtcaaagttagttacttgacagttgacagctgtgtgattaaattacttatagtattgtgatta-tttttttagttagaaaatgaatgagag |
28280598 |
T |
|
| Q |
284 |
catgtttcctttgatatgatgaatcaaattaattttagtgcaaaaatggtattactgaaattttgtctaacgaaatttaaattatcaagttggatggttg |
383 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28280597 |
catgtttcctttg--atgatgaatcaaattaaatttagtgcaaaaacggtattactgaaattttgtctaacgaaatttaaattatcaagttggatggttg |
28280500 |
T |
|
| Q |
384 |
atat |
387 |
Q |
| |
|
|||| |
|
|
| T |
28280499 |
atat |
28280496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University