View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13968_high_9 (Length: 393)

Name: NF13968_high_9
Description: NF13968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13968_high_9
NF13968_high_9
[»] chr3 (5 HSPs)
chr3 (1-379)||(8890967-8891341)
chr3 (11-140)||(31138908-31139034)
chr3 (4-102)||(4853760-4853858)
chr3 (4-92)||(4847345-4847433)
chr3 (4-92)||(4875494-4875582)
[»] chr4 (5 HSPs)
chr4 (1-169)||(8898979-8899148)
chr4 (1-217)||(36614267-36614481)
chr4 (6-140)||(15154864-15154998)
chr4 (1-217)||(31371141-31371356)
chr4 (3-67)||(12634028-12634092)
[»] chr8 (3 HSPs)
chr8 (261-371)||(13183457-13183567)
chr8 (22-227)||(27933617-27933819)
chr8 (8-79)||(9797919-9797990)
[»] chr2 (2 HSPs)
chr2 (1-77)||(24184870-24184946)
chr2 (168-216)||(16918413-16918461)
[»] scaffold1485 (1 HSPs)
scaffold1485 (4-92)||(1149-1237)
[»] chr1 (4 HSPs)
chr1 (1-81)||(45963140-45963220)
chr1 (4-77)||(12789185-12789258)
chr1 (168-217)||(15421835-15421885)
chr1 (175-229)||(45963307-45963361)
[»] scaffold0003 (1 HSPs)
scaffold0003 (45-217)||(356213-356390)
[»] chr6 (1 HSPs)
chr6 (1-63)||(20081806-20081868)
[»] scaffold0179 (1 HSPs)
scaffold0179 (168-221)||(30528-30581)
[»] chr5 (1 HSPs)
chr5 (85-220)||(24887545-24887684)
[»] chr7 (2 HSPs)
chr7 (113-181)||(23395422-23395489)
chr7 (34-162)||(10235163-10235290)
[»] scaffold0664 (1 HSPs)
scaffold0664 (168-217)||(3923-3973)


Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 379
Target Start/End: Original strand, 8890967 - 8891341
Alignment:
Q  1 taaaatagagaaatagatacggaatgtttagaatttagcatcatgatgaaaacaacaatcccatgacgatttttaatatctaacttttaatccaaacaaa 100  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||    
T  8890967 taaaatagagaaatagatacagaatgtttagaatttagcatcatgatgaaaataacaatcccatgacgatttttagtatctaacttttaatccaaataaa 8891066  T
Q  101 tattactcttaaaaacttattccttttcaactaatcaaaaaagaaaatcagatcggtaatcatataaaactccatgtggatcgatatttttactacttga 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  8891067 tattactcttaaaaacttattccttttcaactaatcaaaaaagagaatcagatcggtaataatataaaacttcatgtggatcgatatttttactacttga 8891166  T
Q  201 taaaactgtgcacttgcagaaacctatcaatggcgtttaacactaccannnnnnnnnnnngttgtttccttcttgtagtaaaatgggaagtaaattcttc 300  Q
    || |||||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||    
T  8891167 tagaactgtgcacttgcagaaacctatcaatggcgtttaacactacca----ttttttttgttgtttccttcttgtagtaaaatgggaagtaaattcttc 8891262  T
Q  301 acagagttctctctaagagtcaatggagttatctttaagtcctttgaaccacgtcatctccgcccccttcatggttaat 379  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  8891263 acagagttctctctaagagtcaatggagttatctttaagtcctttgaaccacgtcatctccgctcccttcatggttaat 8891341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 11 - 140
Target Start/End: Complemental strand, 31139034 - 31138908
Alignment:
Q  11 aaatagatacggaatgtttagaatttagcatcatgatgaaaacaacaatcccatgacgatttttaatatctaacttttaatccaaacaaatattactctt 110  Q
    |||| |||| ||||| ||||||||||||||| ||| ||||| |||| ||||||||||| |||   |||||||| |||||| ||||||||| |||   |||    
T  31139034 aaatggatagggaatatttagaatttagcattatgttgaaatcaacgatcccatgacgcttt---atatctaaattttaaaccaaacaaacattgaactt 31138938  T
Q  111 aaaaacttattccttttcaactaatcaaaa 140  Q
     ||||||||||| ||||||  |||||||||    
T  31138937 gaaaacttattcattttcatataatcaaaa 31138908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 102
Target Start/End: Original strand, 4853760 - 4853858
Alignment:
Q  4 aatagagaaatagatacggaatgtttagaatttagcatcatgatgaaaacaacaatcccatgacgatttttaatatctaacttttaatccaaacaaata 102  Q
    |||||||||||||||| ||||||||||| ||||| | | |||||||||||  ||||| |||||||  |||| |||||||| |||||||| ||| |||||    
T  4853760 aatagagaaatagatatggaatgtttaggatttaactttatgatgaaaaccgcaatctcatgacgcatttttatatctaaattttaatcaaaaaaaata 4853858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 4 - 92
Target Start/End: Original strand, 4847345 - 4847433
Alignment:
Q  4 aatagagaaatagatacggaatgtttagaatttagcatcatgatgaaaacaacaatcccatgacgatttttaatatctaacttttaatc 92  Q
    |||||||||||| ||| ||||||||||||||||| | | |||||||||||  ||||| |||||||  ||||||||||| | ||||||||    
T  4847345 aatagagaaatatatagggaatgtttagaatttaactttatgatgaaaacctcaatctcatgacgcattttaatatctgaattttaatc 4847433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 4 - 92
Target Start/End: Original strand, 4875494 - 4875582
Alignment:
Q  4 aatagagaaatagatacggaatgtttagaatttagcatcatgatgaaaacaacaatcccatgacgatttttaatatctaacttttaatc 92  Q
    |||||||||||||||| ||||||||||| ||||| | | |||||||||||  ||||| |||||||  |||| |||||||| ||||||||    
T  4875494 aatagagaaatagatatggaatgtttaggatttaactttatgatgaaaaccgcaatctcatgacgcatttttatatctaaattttaatc 4875582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 5e-29; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 8898979 - 8899148
Alignment:
Q  1 taaaatagagaaatagatacggaatgtttagaatttagcatcatgatgaaaacaacaatcccatgacgatttttaatatctaacttttaatccaaacaaa 100  Q
    ||||||||||||||||||| |||||||| |  ||||  ||| ||||||||| || ||||||||||||| ||| |||||| |||||||||| | |||||||    
T  8898979 taaaatagagaaatagatagggaatgttaaagatttgacattatgatgaaaccatcaatcccatgacgctttctaatatataacttttaaacaaaacaaa 8899078  T
Q  101 tattactcttaaaaacttattcc-ttttcaactaatcaaaaaagaaaatcagatcggtaatcatataaaa 169  Q
     ||| |||||||||||||||||| |||| | ||||||||||  || ||| ||| ||||||||| ||||||    
T  8899079 cattgctcttaaaaacttattccttttttagctaatcaaaactgagaattagaccggtaatcacataaaa 8899148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 36614481 - 36614267
Alignment:
Q  1 taaaatagagaaatagatacggaatgtttagaatttagcatcatgatgaaaacaacaatcccatgacgatttttaatatctaacttttaatccaaacaaa 100  Q
    ||||||||| ||||||||| | ||||| ||||||||  |||  ||||||||||||||||||||| ||| | ||||| |||| | |||| | |||||||||    
T  36614481 taaaatagaaaaatagataagaaatgtatagaatttgacattctgatgaaaacaacaatcccataacgctatttaa-atctgaattttcaaccaaacaaa 36614383  T
Q  101 tattactcttaaaaacttattccttttcaactaatcaaaaaagaaaatcagatcggtaatcatataaaactccatgtggatcgatatttttactacttga 200  Q
     |||||||| ||||||||||| ||||||| ||||||||||   ||||| |||| |||||| |  |  |||||| |||| ||| |||||||||||||| ||    
T  36614382 cattactctcaaaaacttatttcttttcagctaatcaaaattaaaaattagattggtaatta-cttcaactccttgtgcatcaatatttttactactcga 36614284  T
Q  201 taaaactgtgcacttgc 217  Q
    || ||| ||||| ||||    
T  36614283 tagaaccgtgcatttgc 36614267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 6 - 140
Target Start/End: Original strand, 15154864 - 15154998
Alignment:
Q  6 tagagaaatagatacggaatgtttagaatttagcatcatgatgaaaacaacaatcccatgacgatttttaatatctaacttttaatccaaacaaatatta 105  Q
    |||||||||||||| ||||||||||||||||| ||| | ||||||||||| |||||| | | | ||||||| |||| | |||||| ||||||||| | ||    
T  15154864 tagagaaatagatagggaatgtttagaatttaacattacgatgaaaacaagaatcccctaatgctttttaa-atctgaattttaaaccaaacaaacacta 15154962  T
Q  106 ctct-taaaaacttattccttttcaactaatcaaaa 140  Q
    ||||  ||||||||||||||||||||||||||||||    
T  15154963 ctctcaaaaaacttattccttttcaactaatcaaaa 15154998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 31371356 - 31371141
Alignment:
Q  1 taaaatagagaaatagatacggaatgtttagaatttagcatcatgatgaaaacaacaatcccatgacgatttttaatatctaacttttaatccaaacaaa 100  Q
    ||||||||||||||||||| |||||||  |  ||||| ||| |||||||||||  |||||||||| |||||| ||||| ||||  ||||||| ||| |||    
T  31371356 taaaatagagaaatagatagggaatgtcaatgatttaacattatgatgaaaacctcaatcccatggcgatttataatagctaaactttaatctaaa-aaa 31371258  T
Q  101 tattactcttaa-aaacttattccttttcaactaatcaaaaaagaaaatcagatcggtaatcatataaaactccatgtggatcgatatttttactacttg 199  Q
     ||| ||||||| ||| | |||| |||||| ||||||||||   ||||| |||| | |||| |  |  |||| |  ||| ||||||||||||||||||||    
T  31371257 aattgctcttaacaaaataattcattttcagctaatcaaaactaaaaattagattgataatta-ctttaacttcccgtgtatcgatatttttactacttg 31371159  T
Q  200 ataaaactgtgcacttgc 217  Q
    |||| || ||||||||||    
T  31371158 ataagaccgtgcacttgc 31371141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 3 - 67
Target Start/End: Complemental strand, 12634092 - 12634028
Alignment:
Q  3 aaatagagaaatagatacggaatgtttagaatttagcatcatgatgaaaacaacaatcccatgac 67  Q
    ||||||| ||||||||| ||||||||||  ||||||||| |||||| ||||||||||| ||||||    
T  12634092 aaatagaaaaatagatagggaatgtttattatttagcattatgatggaaacaacaatctcatgac 12634028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 7e-25; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 261 - 371
Target Start/End: Complemental strand, 13183567 - 13183457
Alignment:
Q  261 gttgtttccttcttgtagtaaaatgggaagtaaattcttcacagagttctctctaagagtcaatggagttatctttaagtcctttgaaccacgtcatctc 360  Q
    ||||||||||||||||||| |||||||||||||||| |||||| | ||||||| ||| ||||||| |||| |||| ||||||||||||||| |||||       
T  13183567 gttgtttccttcttgtagttaaatgggaagtaaatttttcacataattctctccaagtgtcaatgcagttgtcttcaagtcctttgaaccaggtcattgt 13183468  T
Q  361 cgcccccttca 371  Q
    |||||||||||    
T  13183467 cgcccccttca 13183457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 22 - 227
Target Start/End: Original strand, 27933617 - 27933819
Alignment:
Q  22 gaatgtttagaatttagcatcatgatgaaaacaacaatcccatgacgatttttaatatctaacttttaatccaaacaaatattactcttaaaaacttatt 121  Q
    |||||||||||||||||||| | |||| ||| ||||||||||||||  || |||| |||| | |||| | ||||||||| |||||||| |||||||||||    
T  27933617 gaatgtttagaatttagcattacgatggaaa-aacaatcccatgacacttattaa-atctgaattttgaaccaaacaaacattactctaaaaaacttatt 27933714  T
Q  122 ccttttcaactaatcaaaaaagaaaatcagatcggtaatcatataaaactccatgtggatcgatatttttactacttgataaaactgtgcacttgcagaa 221  Q
    | |||||| |||| |||||  || ||| |||| |||||| |  |  |||| | ||||||||||||||||||||||| |||| | | || ||||||| |||    
T  27933715 ctttttcagctaaacaaaactgagaattagattggtaatta-cttcaacttcttgtggatcgatatttttactactagatagagccgtacacttgcggaa 27933813  T
Q  222 acctat 227  Q
    ||||||    
T  27933814 acctat 27933819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 79
Target Start/End: Complemental strand, 9797990 - 9797919
Alignment:
Q  8 gagaaatagatacggaatgtttagaatttagcatcatgatgaaaacaacaatcccatgacgatttttaatat 79  Q
    |||||||||||  ||||||||||  |||| |||| ||||||||| |||  ||||||||||| ||||||||||    
T  9797990 gagaaatagatttggaatgtttatgatttcgcattatgatgaaaccaatgatcccatgacgctttttaatat 9797919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 24184946 - 24184870
Alignment:
Q  1 taaaatagagaaatagatacggaatgtttagaatttagcatcatgatgaaaacaacaatcccatgacgatttttaat 77  Q
    |||||||| |||||||| | |||||||||||||||||| || |||||||||||||||||||||||||| ||||||||    
T  24184946 taaaatagcgaaatagacaaggaatgtttagaatttagtattatgatgaaaacaacaatcccatgacgctttttaat 24184870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 216
Target Start/End: Original strand, 16918413 - 16918461
Alignment:
Q  168 aactccatgtggatcgatatttttactacttgataaaactgtgcacttg 216  Q
    ||||||||||||||||| |||||||||||| |||| ||| |||||||||    
T  16918413 aactccatgtggatcgacatttttactactcgatagaaccgtgcacttg 16918461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1485 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold1485
Description:

Target: scaffold1485; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 1237 - 1149
Alignment:
Q  4 aatagagaaatagatacggaatgtttagaatttagcatcatgatgaaaacaacaatcccatgacgatttttaatatctaacttttaatc 92  Q
    |||||||||||||||| ||||||||||| ||||| | | |||||||||||  ||||| |||||||  |||| |||||||| ||||||||    
T  1237 aatagagaaatagatatggaatgtttaggatttaactttatgatgaaaaccgcaatctcatgacgcatttttatatctaaattttaatc 1149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 45963140 - 45963220
Alignment:
Q  1 taaaatagagaaatagatacggaatgtttagaatttagcatcatgatgaaaacaacaatcccatgacgatttttaatatct 81  Q
    ||||||||||||||||||   |||||||||  ||||| ||| |||||||||||  ||||||||||||| ||||||||||||    
T  45963140 taaaatagagaaatagatggagaatgtttaagatttaacattatgatgaaaacttcaatcccatgacgttttttaatatct 45963220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 4 - 77
Target Start/End: Original strand, 12789185 - 12789258
Alignment:
Q  4 aatagagaaatagatacggaatgtttagaatttagcatcatgatgaaaacaacaatcccatgacgatttttaat 77  Q
    ||||||| |||| ||| ||||||||||||||||||| | ||||| ||||||||||||  |||||  ||||||||    
T  12789185 aatagaggaataaatatggaatgtttagaatttagcgttatgataaaaacaacaatcttatgacactttttaat 12789258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 217
Target Start/End: Original strand, 15421835 - 15421885
Alignment:
Q  168 aactccatgtggatcgatatttttactac-ttgataaaactgtgcacttgc 217  Q
    ||||||||||||| | ||||||||||||| |||||||||| ||||||||||    
T  15421835 aactccatgtggaacaatatttttactactttgataaaaccgtgcacttgc 15421885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 229
Target Start/End: Original strand, 45963307 - 45963361
Alignment:
Q  175 tgtggatcgatatttttactacttgataaaactgtgcacttgcagaaacctatca 229  Q
    |||| || ||||||||||||||| |||| |||||||||||| || ||||||||||    
T  45963307 tgtgcatagatatttttactactcgatagaactgtgcacttccaaaaacctatca 45963361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 45 - 217
Target Start/End: Complemental strand, 356390 - 356213
Alignment:
Q  45 gatgaaaacaacaatcccatgacgatttttaat-atctaacttttaatccaaacaaatattactcttaa-aaacttattccttttcaactaatcaaaaaa 142  Q
    |||||||||  ||||||||||| | |||||||  |||| | |||||| ||||||||| ||| ||||||| ||||||||| ||||||  ||||| ||||      
T  356390 gatgaaaacctcaatcccatgatgctttttaaacatctgaattttaaaccaaacaaacattgctcttaacaaacttatttcttttccgctaattaaaact 356291  T
Q  143 gaaaatcagatcggtaatcatataaaactccatgtggatcgata---tttttactacttgataaaactgtgcacttgc 217  Q
     ||||| |||| ||||||||||||||| ||| ||| |||| |||   ||||||||| |||||| ||  ||||||||||    
T  356290 aaaaattagattggtaatcatataaaattccctgtagatcaatactctttttactatttgatagaaaagtgcacttgc 356213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 20081868 - 20081806
Alignment:
Q  1 taaaatagagaaatagatacggaatgtttagaatttagcatcatgatgaaaacaacaatccca 63  Q
    ||||||||||||||||||| | |||  ||||||||||| || |||||||||||||||||||||    
T  20081868 taaaatagagaaatagatatgaaataattagaatttagtattatgatgaaaacaacaatccca 20081806  T

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Target: scaffold0179 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 30528 - 30581
Alignment:
Q  168 aactccatgtggatcgatatttttactacttgataaaactgtgcacttgcagaa 221  Q
    ||||||||||||||  |||||||||||||| |||| ||||||||||||||||||    
T  30528 aactccatgtggatatatatttttactactcgatagaactgtgcacttgcagaa 30581  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 85 - 220
Target Start/End: Original strand, 24887545 - 24887684
Alignment:
Q  85 ttttaatccaaacaaatattactcttaa-aaacttattccttttcaactaatcaaaaaagaaaatcagatcggtaatcatataaaactccatgtggatcg 183  Q
    |||||| || |||||| ||| ||||||| |||||||||| |||||| |||||||||||   |||| |||| | |||||| ||||||||||  |||||||     
T  24887545 ttttaaacctaacaaacattgctcttaacaaacttattcattttcagctaatcaaaaacagaaattagattgataatcacataaaactcctcgtggatca 24887644  T
Q  184 ata---tttttactacttgataaaactgtgcacttgcaga 220  Q
    |||   ||||| ||||| |||| ||| || ||||||||||    
T  24887645 atacattttttcctactcgatagaaccgtacacttgcaga 24887684  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 181
Target Start/End: Original strand, 23395422 - 23395489
Alignment:
Q  113 aaacttattccttttcaactaatcaaaaaagaaaatcagatcggtaatcatataaaactccatgtggat 181  Q
    |||||||||||||||||||||||||||| ||| ||  |||| |||||||| || |||| ||||||||||    
T  23395422 aaacttattccttttcaactaatcaaaatagagaaatagattggtaatcacat-aaacaccatgtggat 23395489  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 162
Target Start/End: Original strand, 10235163 - 10235290
Alignment:
Q  34 tttagcatcatgatgaaaacaacaatcccatgacgatttttaatatctaacttttaatccaaacaaatattactcttaa-aaacttattccttttcaact 132  Q
    |||| ||| |||||||||||| |||||||||| || |||||||||||| | ||||||  ||||||| |||| |||||||  || |||||| |||| | ||    
T  10235163 tttaacattatgatgaaaacatcaatcccatg-cgctttttaatatctgaattttaa-gcaaacaactattgctcttaaccaaattattcttttttagct 10235260  T
Q  133 aatcaaaaaagaaaatcagatcggtaatca 162  Q
    ||||||||   ||||| |||| ||||||||    
T  10235261 aatcaaaactaaaaattagattggtaatca 10235290  T

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Target: scaffold0664 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0664
Description:

Target: scaffold0664; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 217
Target Start/End: Original strand, 3923 - 3973
Alignment:
Q  168 aactccatgtggatcgatatttttactactt-gataaaactgtgcacttgc 217  Q
    ||||||||||||| |||||||||||||| || |||||||| ||||||||||    
T  3923 aactccatgtggaacgatatttttactatttcgataaaaccgtgcacttgc 3973  T

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