View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13968_low_10 (Length: 389)
Name: NF13968_low_10
Description: NF13968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13968_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 380
Target Start/End: Original strand, 40803965 - 40804341
Alignment:
| Q |
1 |
ttttgagtcaagacattgtgtcaactctcacttcagcatattgatttgaggcacacatcctaccatcctcgttttaactttgcatttatggtaacggtga |
100 |
Q |
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| T |
40803965 |
ttttgagtcaagacattgtctcaactctcacttcagcatattgatttgaggcacacatcctaccatcctcgttttaactttgcatttatggtaacggtga |
40804064 |
T |
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| Q |
101 |
agacatcaatatttaatnnnnnnnnnnnntgtagtaaaaatattaccattatctttctttagcaaacttcaagtatttagcaatttcagaccatctcata |
200 |
Q |
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| T |
40804065 |
atacatcaatatttaataaaaaaaaa---tgtagtaaaaatattaccattatctttctttagcaaacttcaagtatttagcaatttcagaccatctcata |
40804161 |
T |
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| Q |
201 |
tggtcttgatataacatgaaatgatggtttccaaaacgttatttgtgagtttgattttgaagggatccaatttctcatagcctaatttctttgctgcttg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40804162 |
tggtcttgatataacatgaaatgatggtttccaaaacgttatttgtgagtttgattttgaagggatccaatttctcatagcctaatttctttgctgcttg |
40804261 |
T |
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| Q |
301 |
ttttatttattttccattgacataaaatccatcgacataaaatttgaacatgcatgcatgtctggattcacattaagaat |
380 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40804262 |
ttttatttattttccattgacataaaatccatcgacataaaatttgaacatgcatgcatgtctggattcacattaagaat |
40804341 |
T |
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