View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13968_low_19 (Length: 307)
Name: NF13968_low_19
Description: NF13968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13968_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 15 - 234
Target Start/End: Complemental strand, 29966423 - 29966203
Alignment:
| Q |
15 |
cagagatacaaacctttgctcagctaatgataaatttttaaaattgatggagtttttta-ggtgaatcaaactattcagtactatgaaaacaccacttcc |
113 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
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| T |
29966423 |
cagagatacaaaccttaactcagctaatgataaatttttaaaattgatggagttttttatggtgaatcaaactattcagtactatgaaaacactacttcc |
29966324 |
T |
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| Q |
114 |
aatatttcctctaatcaaattatttatttgttcctctaatttctagaattttaggcatcgcttatgttataattgcatgaaaatctgtatttatactttc |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
29966323 |
aatatttcctctaatcaaattatttatttgttcctctaatttctagaattttaggcatcccttatgttataattgcatgaaaatctgtatttatactttc |
29966224 |
T |
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| Q |
214 |
acaacctaaaagttgttttga |
234 |
Q |
| |
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|||||||||||||||| |||| |
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| T |
29966223 |
acaacctaaaagttgtcttga |
29966203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 15 - 234
Target Start/End: Original strand, 30008375 - 30008595
Alignment:
| Q |
15 |
cagagatacaaacctttgctcagctaatgataaatttttaaaattgatggagtttttta-ggtgaatcaaactattcagtactatgaaaacaccacttcc |
113 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
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| T |
30008375 |
cagagatacaaaccttaactcagctaatgataaatttttaaaattgatggagttttttatggtgaatcaaactattcagtactatgaaaacactacttcc |
30008474 |
T |
|
| Q |
114 |
aatatttcctctaatcaaattatttatttgttcctctaatttctagaattttaggcatcgcttatgttataattgcatgaaaatctgtatttatactttc |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
30008475 |
aatatttcctctaatcaaattatttatttgttcctctaatttctagaattttaggcatcccttatgttataattgcatgaaaatctgtatttatactttc |
30008574 |
T |
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| Q |
214 |
acaacctaaaagttgttttga |
234 |
Q |
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|||||||||||||||| |||| |
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| T |
30008575 |
acaacctaaaagttgtcttga |
30008595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 245 - 292
Target Start/End: Complemental strand, 29965886 - 29965839
Alignment:
| Q |
245 |
aaccagtgaactaattcttcataccatggtcaacctgatgtcataggt |
292 |
Q |
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||||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
29965886 |
aaccagtgaactaattcttcataccattgtgaacctgatgtcataggt |
29965839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 245 - 292
Target Start/End: Original strand, 30008912 - 30008959
Alignment:
| Q |
245 |
aaccagtgaactaattcttcataccatggtcaacctgatgtcataggt |
292 |
Q |
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||||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
30008912 |
aaccagtgaactaattcttcataccattgtgaacctgatgtcataggt |
30008959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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