View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13968_low_2 (Length: 458)
Name: NF13968_low_2
Description: NF13968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13968_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 9 - 449
Target Start/End: Complemental strand, 24515769 - 24515311
Alignment:
| Q |
9 |
cgaccctgacacgacacctttaattacatctgattacgtcattttttaaaattatgtcggtgtccgtgtcgtgttcagtgtccatgtc------------ |
96 |
Q |
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| T |
24515769 |
cgaccctgacacgacacctttaattacacctgattacgtcattttttaaaattatgtcggtgtccgtgtcgtgttcagtgtccatgtcgtgttcagtgtc |
24515670 |
T |
|
| Q |
97 |
------tgttcatgcttcataggcacgaaatctttaataattcaaaccaaatattttatcaattttatctgtcttgaggttgcataggttcatttttaat |
190 |
Q |
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||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
24515669 |
catgtctgttcatgcttcacaggcacaaaatctttaataattcaaaccaaatattttatcaattttatctgtcttgtggttgcataggttcatttttaat |
24515570 |
T |
|
| Q |
191 |
cttttctaacttcaccttttgtgaaatgtgaaataaagggttttgctgctggtttaatgctgagcatatcattttttgatcttgctcataatgccataaa |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24515569 |
cttttctaacttcaccttttgtgaaatgtgaaataaagggttttgctgctggtttaatgctgagcatatcattttttgatcttgctcataatgccataaa |
24515470 |
T |
|
| Q |
291 |
cacactaggcttcctcagaggcaacctttgggtaaagcctttctcttctctttactccttcaacataattctagtactctacattgttctctcatgttta |
390 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24515469 |
cacactaggcttcctcagaggcaacctttgggtaaagcctttctcttctctttactccttcaacataattctagtactctacattgttctctcatgttta |
24515370 |
T |
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| Q |
391 |
ttctaacaatgttgttttattttcttcttcatctagnnnnnnnctggtgtcatattctt |
449 |
Q |
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| T |
24515369 |
ttctaacaatgttgttttattttcttcttcatctagtttttttctggtgtcatattctt |
24515311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 226 - 324
Target Start/End: Complemental strand, 41949251 - 41949153
Alignment:
| Q |
226 |
aagggttttgctgctggtttaatgctgagcatatcattttttgatcttgctcataatgccataaacacactaggcttcctcagaggcaacctttgggta |
324 |
Q |
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|||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||| |||||| |||| |||||| | | |||||||||||||||| |
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| T |
41949251 |
aagggttttgctgctggtttgatgctgagcatatcattctttgatctggctcataatgctataaactcactgggcttcttgaaaggcaacctttgggta |
41949153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 96
Target Start/End: Original strand, 29447184 - 29447217
Alignment:
| Q |
63 |
tgtcggtgtccgtgtcgtgttcagtgtccatgtc |
96 |
Q |
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| T |
29447184 |
tgtcggtgtccgtgtcgtgtccagtgtccatgtc |
29447217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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