View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13968_low_20 (Length: 306)

Name: NF13968_low_20
Description: NF13968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13968_low_20
NF13968_low_20
[»] chr4 (1 HSPs)
chr4 (9-289)||(53687445-53687727)
[»] chr8 (1 HSPs)
chr8 (54-209)||(24994119-24994266)
[»] chr5 (1 HSPs)
chr5 (45-93)||(22817478-22817526)
[»] chr1 (4 HSPs)
chr1 (171-211)||(5770715-5770755)
chr1 (174-204)||(37708004-37708034)
chr1 (180-217)||(45886864-45886901)
chr1 (171-211)||(5766976-5767016)
[»] chr6 (2 HSPs)
chr6 (171-211)||(30746744-30746784)
chr6 (171-211)||(30747501-30747541)


Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 9 - 289
Target Start/End: Original strand, 53687445 - 53687727
Alignment:
Q  9 aatatgaataacaatttgccaaaattgcatctccaatgctggtgctgctggaggtaattttttgttctttttggcttcgacccttacctctcactaagta 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53687445 aatatgaataacaatttgccaaaattgcatctccaatgctggtgctgctggaggtaattttttgttctttttggcttcgacccttacctctcactaagta 53687544  T
Q  109 tgctattgctagctgctgtcaagaattgaactggcgtgagttaagtcacgtc-ggatttggtcatttcagttgggcgcgagtgttttgtgctgggtaaag 207  Q
    |||||||||||||||| | ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  53687545 tgctattgctagctgcggccaagaattgaactggcgtgagttaagtcacgtcggggtttggtcatttcagttgggcgcgagtgttttgtgctgggtaaag 53687644  T
Q  208 agcaagattcnnnnnnnaaaattgcataaaaat-ggtccaactttggacaagtcaatgaaattacttttctgacattcaaaac 289  Q
    ||||||||||       |||||||||||||||| |||||||||||  |||||||||  |||||||||||||||||||||||||    
T  53687645 agcaagattctttttctaaaattgcataaaaatgggtccaactttaaacaagtcaagaaaattacttttctgacattcaaaac 53687727  T

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Target: chr8 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 54 - 209
Target Start/End: Complemental strand, 24994266 - 24994119
Alignment:
Q  54 tgctggaggtaattttttgttctttttggcttcgacccttacctctcactaagtatgctattgctagctgctgtcaagaattgaactggcgtgagttaag 153  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||             ||||||||||||||||||||||||| ||||||||||||    
T  24994266 tgctggaggtaattttttgttctttttggcttcgacccttacctctcac------------ggctagctgctgtcaagaattgaactagcgtgagttaag 24994179  T
Q  154 tcacgtcggatt----tggtcatttcagttgggcgcgagtgttttgtgctgggtaaagag 209  Q
    ||| |||| | |    ||||||||||| |||| |||||||||||| || || ||||||||    
T  24994178 tcatgtcgaagtaaaatggtcatttcaattggacgcgagtgttttatgttgagtaaagag 24994119  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 45 - 93
Target Start/End: Complemental strand, 22817526 - 22817478
Alignment:
Q  45 tgctggtgctgctggaggtaattttttgttctttttggcttcgaccctt 93  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||    
T  22817526 tgctggtgctgctgctggtaattttttgttctttttggcttcgaccctt 22817478  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 5770715 - 5770755
Alignment:
Q  171 atttcagttgggcgcgagtgttttgtgctgggtaaagagca 211  Q
    ||||||| |||| ||||||||||||||||||||||||||||    
T  5770715 atttcagctgggtgcgagtgttttgtgctgggtaaagagca 5770755  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 204
Target Start/End: Complemental strand, 37708034 - 37708004
Alignment:
Q  174 tcagttgggcgcgagtgttttgtgctgggta 204  Q
    |||||||||||||||||||||||||||||||    
T  37708034 tcagttgggcgcgagtgttttgtgctgggta 37708004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 217
Target Start/End: Complemental strand, 45886901 - 45886864
Alignment:
Q  180 gggcgcgagtgttttgtgctgggtaaagagcaagattc 217  Q
    |||||||||||||||||||||||| |||||||| ||||    
T  45886901 gggcgcgagtgttttgtgctgggtgaagagcaaaattc 45886864  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 5766976 - 5767016
Alignment:
Q  171 atttcagttgggcgcgagtgttttgtgctgggtaaagagca 211  Q
    |||||||||| ||| ||||||||||| ||||||||||||||    
T  5766976 atttcagttgagcgtgagtgttttgtactgggtaaagagca 5767016  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 211
Target Start/End: Complemental strand, 30746784 - 30746744
Alignment:
Q  171 atttcagttgggcgcgagtgttttgtgctgggtaaagagca 211  Q
    |||||| ||||||||||| |||||||| |||||||||||||    
T  30746784 atttcaattgggcgcgagcgttttgtgttgggtaaagagca 30746744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 30747501 - 30747541
Alignment:
Q  171 atttcagttgggcgcgagtgttttgtgctgggtaaagagca 211  Q
    ||||||||||| |||||| |||||||| |||||||||||||    
T  30747501 atttcagttggtcgcgagcgttttgtgttgggtaaagagca 30747541  T

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