View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13968_low_27 (Length: 230)
Name: NF13968_low_27
Description: NF13968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13968_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 16 - 209
Target Start/End: Original strand, 27205727 - 27205920
Alignment:
| Q |
16 |
attattctgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatgaacattgaagaaaaactgattttgttgaattcacc |
115 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27205727 |
attatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatgaacattgaagaaaaactgattttgttgaattcacc |
27205826 |
T |
|
| Q |
116 |
acatactgcttacattcaacttagcattacaaagcctttatataggctagaaggaagttgatagagaatacaaataggttgataacaaacctac |
209 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
27205827 |
acatactgcttacgttcaacttagcattacaaagcctttatataggctagaaggaaactgatagagaatacaaataggttgataacaaacctac |
27205920 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 16 - 209
Target Start/End: Original strand, 27210192 - 27210385
Alignment:
| Q |
16 |
attattctgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatgaacattgaagaaaaactgattttgttgaattcacc |
115 |
Q |
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||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27210192 |
attatactattgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatgaacattgaagaaaaactgattttgttgaattcacc |
27210291 |
T |
|
| Q |
116 |
acatactgcttacattcaacttagcattacaaagcctttatataggctagaaggaagttgatagagaatacaaataggttgataacaaacctac |
209 |
Q |
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||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
27210292 |
acatactacttacgttcaacttagcattacaaagcctttatatagactagaaggaaactgatagagaatacaaataggttgataacaaacctac |
27210385 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 174; Significance: 9e-94; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 16 - 209
Target Start/End: Original strand, 26897314 - 26897506
Alignment:
| Q |
16 |
attattctgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatgaacattgaagaaaaactgattttgttgaattcacc |
115 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26897314 |
attatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatgaacattgaagaaaaactgattttgttgaattcacc |
26897413 |
T |
|
| Q |
116 |
acatactgcttacattcaacttagcattacaaagcctttatataggctagaaggaagttgatagagaatacaaataggttgataacaaacctac |
209 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
26897414 |
acatactgcttac-ttcaacttagcattacaaagcctttatataggctagaaggaaactgatagagaatacaaataggttgataacaaacctac |
26897506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 16 - 209
Target Start/End: Original strand, 26901776 - 26901968
Alignment:
| Q |
16 |
attattctgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatgaacattgaagaaaaactgattttgttgaattcacc |
115 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26901776 |
attatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatgaacattgaagaaaaactgattttgttgaattcacc |
26901875 |
T |
|
| Q |
116 |
acatactgcttacattcaacttagcattacaaagcctttatataggctagaaggaagttgatagagaatacaaataggttgataacaaacctac |
209 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
26901876 |
acatactgcttac-ttcaacttagcattacaaagcctttatataggctagaaggaaactgatagagaatacaaataggttgataacaaacctac |
26901968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 166; Significance: 5e-89; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 16 - 209
Target Start/End: Complemental strand, 24047237 - 24047044
Alignment:
| Q |
16 |
attattctgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatgaacattgaagaaaaactgattttgttgaattcacc |
115 |
Q |
| |
|
||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
24047237 |
attatactgttgcaggatcttgagcggaaacgtgactttttatactatacttccactggtggatgaacattgaataaaaactgattttgttgaattcacc |
24047138 |
T |
|
| Q |
116 |
acatactgcttacattcaacttagcattacaaagcctttatataggctagaaggaagttgatagagaatacaaataggttgataacaaacctac |
209 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
24047137 |
acatactgcttactttcaacttagcattacaaagcctttatataggctagaaggaaactgatagagaatacaaataggttgataacaaacctac |
24047044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 16 - 209
Target Start/End: Complemental strand, 23674961 - 23674768
Alignment:
| Q |
16 |
attattctgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatgaacattgaagaaaaactgattttgttgaattcacc |
115 |
Q |
| |
|
||||| |||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
23674961 |
attatactgttgcaggatcttgagcgaaaacgtgactttttatactatacttccactggtggatgaacattgaataaaaactgattttgttgaattcacc |
23674862 |
T |
|
| Q |
116 |
acatactgcttacattcaacttagcattacaaagcctttatataggctagaaggaagttgatagagaatacaaataggttgataacaaacctac |
209 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
23674861 |
acatactgcttactttcaacttagcattacaaagcctttatataggctagaaggaaactgatagagaatacaaataggttgataacaaacctac |
23674768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 16 - 209
Target Start/End: Complemental strand, 23679466 - 23679273
Alignment:
| Q |
16 |
attattctgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatgaacattgaagaaaaactgattttgttgaattcacc |
115 |
Q |
| |
|
||||| |||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
23679466 |
attatactgttgcaggatcttgagcgaaaacgtgactttttatactatacttccactggtggatgaacattgaataaaaactgattttgttgaattcacc |
23679367 |
T |
|
| Q |
116 |
acatactgcttacattcaacttagcattacaaagcctttatataggctagaaggaagttgatagagaatacaaataggttgataacaaacctac |
209 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
23679366 |
acatactgcttactttcaacttagcattacaaagcctttatataggctagaaggaaactgatagagaatacaaataggttgataacaaacctac |
23679273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 16 - 209
Target Start/End: Complemental strand, 24051703 - 24051510
Alignment:
| Q |
16 |
attattctgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatgaacattgaagaaaaactgattttgttgaattcacc |
115 |
Q |
| |
|
||||| |||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
24051703 |
attatactgttgcaggatcttgagcgaaaacgtgactttttatactatacttccactggtggatgaacattgaataaaaactgattttgttgaattcacc |
24051604 |
T |
|
| Q |
116 |
acatactgcttacattcaacttagcattacaaagcctttatataggctagaaggaagttgatagagaatacaaataggttgataacaaacctac |
209 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
24051603 |
acatactgcttactttcaacttagcattacaaagcctttatataggctagaaggaaactgatagagaatacaaataggttgataacaaacctac |
24051510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 166; Significance: 5e-89; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 16 - 209
Target Start/End: Complemental strand, 26406847 - 26406654
Alignment:
| Q |
16 |
attattctgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatgaacattgaagaaaaactgattttgttgaattcacc |
115 |
Q |
| |
|
||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
26406847 |
attatactgttgcaggatcttgagcggaaacgtgactttttatactatacttccactggtggatgaacattgaataaaaactgattttgttgaattcacc |
26406748 |
T |
|
| Q |
116 |
acatactgcttacattcaacttagcattacaaagcctttatataggctagaaggaagttgatagagaatacaaataggttgataacaaacctac |
209 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
26406747 |
acatactgcttactttcaacttagcattacaaagcctttatataggctagaaggaaactgatagagaatacaaataggttgataacaaacctac |
26406654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 16 - 209
Target Start/End: Complemental strand, 26411313 - 26411120
Alignment:
| Q |
16 |
attattctgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatgaacattgaagaaaaactgattttgttgaattcacc |
115 |
Q |
| |
|
||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
26411313 |
attatactgttgcaggatcttgagcggaaacgtgactttttatactatacttccactggtggatgaacattgaataaaaactgattttgttgaattcacc |
26411214 |
T |
|
| Q |
116 |
acatactgcttacattcaacttagcattacaaagcctttatataggctagaaggaagttgatagagaatacaaataggttgataacaaacctac |
209 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
26411213 |
acatactgcttactttcaacttagcattacaaagcctttatataggctagaaggaaactgatagagaatacaaataggttgataacaaacctac |
26411120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 16 - 126
Target Start/End: Complemental strand, 24859292 - 24859182
Alignment:
| Q |
16 |
attattctgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatgaacattgaagaaaaactgattttgttgaattcacc |
115 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24859292 |
attatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatgaacattgaagaaaaactgattttgttgaattcacc |
24859193 |
T |
|
| Q |
116 |
acatactgctt |
126 |
Q |
| |
|
|||||||||| |
|
|
| T |
24859192 |
gcatactgctt |
24859182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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