View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13968_low_4 (Length: 413)

Name: NF13968_low_4
Description: NF13968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13968_low_4
NF13968_low_4
[»] chr3 (5 HSPs)
chr3 (214-394)||(13491856-13492036)
chr3 (1-112)||(13491645-13491756)
chr3 (290-386)||(25596902-25596998)
chr3 (314-386)||(25601731-25601803)
chr3 (326-372)||(13459640-13459686)
[»] chr1 (2 HSPs)
chr1 (266-373)||(14288891-14288998)
chr1 (323-392)||(28928436-28928505)
[»] chr7 (3 HSPs)
chr7 (266-362)||(45498177-45498273)
chr7 (263-371)||(32413597-32413705)
chr7 (263-369)||(6889119-6889225)
[»] chr5 (1 HSPs)
chr5 (272-369)||(25064233-25064330)
[»] chr6 (3 HSPs)
chr6 (266-370)||(7115544-7115648)
chr6 (266-370)||(7120616-7120720)
chr6 (266-370)||(7124020-7124124)


Alignment Details
Target: chr3 (Bit Score: 173; Significance: 7e-93; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 214 - 394
Target Start/End: Original strand, 13491856 - 13492036
Alignment:
Q  214 atttgggtcgacaatgaagagactaaagcgaactgaaaacaaagacaatctcagtgagttgcctgattgcgttttacttcacattctgtcttttttggac 313  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13491856 atttgggtcgagaatgaagagactaaagcgaactgaaaacaaagacaatctcagtgagttgcctgattgcgttttacttcacattctgtcttttttggac 13491955  T
Q  314 accaaacttgctgttcaaacttgcatactgtccgcgagatggaagaatctttggaagcatgttcccgcccttagattaaat 394  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  13491956 accaaacttgctgttcaaacttgcatactgtccgcgagatggaagaatctgtggaagcatgttcccgcccttagattaaat 13492036  T

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Target: chr3; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 13491645 - 13491756
Alignment:
Q  1 tgtcctacgataggacggtgataagaggcgaaaggtagaagaagagttttgtctcaattatcatcaatcacaaacaacacctcgccaaaggtatttctcc 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13491645 tgtcctacgatacgacggtgataagaggcgaaaggtagaagaagagttttgtctcaattatcatcaatcacaaacaacacctcgccaaaggtatttctcc 13491744  T
Q  101 tttctcaattga 112  Q
    ||| ||||||||    
T  13491745 tttttcaattga 13491756  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 290 - 386
Target Start/End: Original strand, 25596902 - 25596998
Alignment:
Q  290 cttcacattctgtcttttttggacaccaaacttgctgttcaaacttgcatactgtccgcgagatggaagaatctttggaagcatgttcccgccctta 386  Q
    ||||||||| |||| |||||| | |||||   ||| ||||||||||||||  ||||  |||||||||||||||||||||| ||| ||||| ||||||    
T  25596902 cttcacattttgtcatttttgaataccaagtatgccgttcaaacttgcattttgtctacgagatggaagaatctttggaaacatattcccaccctta 25596998  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 314 - 386
Target Start/End: Original strand, 25601731 - 25601803
Alignment:
Q  314 accaaacttgctgttcaaacttgcatactgtccgcgagatggaagaatctttggaagcatgttcccgccctta 386  Q
    ||||||| ||||||||||||||||||  ||||| | ||||||||| |||||||||| | | ||||| ||||||    
T  25601731 accaaacatgctgttcaaacttgcattttgtccacaagatggaagtatctttggaaacgtattcccaccctta 25601803  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 326 - 372
Target Start/End: Original strand, 13459640 - 13459686
Alignment:
Q  326 gttcaaacttgcatactgtccgcgagatggaagaatctttggaagca 372  Q
    ||||||||||||||||||||| | ||||||| |||||| ||||||||    
T  13459640 gttcaaacttgcatactgtccacaagatggaggaatctctggaagca 13459686  T

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Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 266 - 373
Target Start/End: Complemental strand, 14288998 - 14288891
Alignment:
Q  266 agtgagttgcctgattgcgttttacttcacattctgtcttttttggacaccaaacttgctgttcaaacttgcatactgtccgcgagatggaagaatcttt 365  Q
    ||||| || |||||||||||||||||||||||| ||||||||||| | ||||||   || ||||||||||||||||| |||   |||||||||||||| |    
T  14288998 agtgatttacctgattgcgttttacttcacattatgtcttttttgaaaaccaaatacgccgttcaaacttgcatactctccaaaagatggaagaatctct 14288899  T
Q  366 ggaagcat 373  Q
    ||||||||    
T  14288898 ggaagcat 14288891  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 323 - 392
Target Start/End: Complemental strand, 28928505 - 28928436
Alignment:
Q  323 gctgttcaaacttgcatactgtccgcgagatggaagaatctttggaagcatgttcccgcccttagattaa 392  Q
    |||||||||||||||||||| ||| |  ||||||||||||| ||||||| | ||||| |||||| |||||    
T  28928505 gctgttcaaacttgcatactctccactcgatggaagaatctctggaagcgtcttcccacccttacattaa 28928436  T

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Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 266 - 362
Target Start/End: Complemental strand, 45498273 - 45498177
Alignment:
Q  266 agtgagttgcctgattgcgttttacttcacattctgtcttttttggacaccaaacttgctgttcaaacttgcatactgtccgcgagatggaagaatc 362  Q
    ||||| || |||||||||||||||||||||||| ||||||||||| | ||||||   || ||||||||||||||||| |||   |||||||||||||    
T  45498273 agtgatttacctgattgcgttttacttcacattatgtcttttttgaaaaccaaatgcgccgttcaaacttgcatactctccaaaagatggaagaatc 45498177  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 263 - 371
Target Start/End: Original strand, 32413597 - 32413705
Alignment:
Q  263 ctcagtgagttgcctgattgcgttttacttcacattctgtcttttttggacaccaaacttgctgttcaaacttgcatactgtccgcgagatggaagaatc 362  Q
    |||||||| ||  ||||||| |||||||||||||| || || | |||| |||||||||  || ||||||||||||||  ||||| | |||||||||||||    
T  32413597 ctcagtgatttatctgattgtgttttacttcacatactctcctctttgaacaccaaacacgccgttcaaacttgcattttgtccacaagatggaagaatc 32413696  T
Q  363 tttggaagc 371  Q
    | |||||||    
T  32413697 tctggaagc 32413705  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 263 - 369
Target Start/End: Original strand, 6889119 - 6889225
Alignment:
Q  263 ctcagtgagttgcctgattgcgttttacttcacattctgtcttttttggacaccaaacttgctgttcaaacttgcatactgtccgcgagatggaagaatc 362  Q
    |||||||| || || ||||| ||| | |||||||| || |||||||||||||||| |   ||||||||||||||||| || |||   |||||||| ||||    
T  6889119 ctcagtgacttacccgattgtgttattcttcacatactctcttttttggacaccatagacgctgttcaaacttgcattctatccaaaagatggaacaatc 6889218  T
Q  363 tttggaa 369  Q
    | |||||    
T  6889219 tctggaa 6889225  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 272 - 369
Target Start/End: Original strand, 25064233 - 25064330
Alignment:
Q  272 ttgcctgattgcgttttacttcacattctgtcttttttggacaccaaacttgctgttcaaacttgcatactgtccgcgagatggaagaatctttggaa 369  Q
    ||||||||||| ||| |||||||||| || || ||| | |||||||||| ||| || ||||| |||||| ||||| | |||||||| |||||||||||    
T  25064233 ttgcctgattgtgttctacttcacatactctcctttctagacaccaaacatgcagtccaaacatgcatattgtccccaagatggaacaatctttggaa 25064330  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 370
Target Start/End: Complemental strand, 7115648 - 7115544
Alignment:
Q  266 agtgagttgcctgattgcgttttacttcacattctgtcttttttggacaccaaacttgctgttcaaacttgcatactgtccgcgagatggaagaatcttt 365  Q
    ||||| || |||||||| |||||||||||||| || ||||||||| ||||||||   || |||||||||||  |  |||||   |||||||||||||| |    
T  7115648 agtgatttacctgattgtgttttacttcacatactctcttttttgaacaccaaatacgcagttcaaacttgtgttttgtccaaaagatggaagaatctct 7115549  T
Q  366 ggaag 370  Q
    |||||    
T  7115548 ggaag 7115544  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 370
Target Start/End: Complemental strand, 7120720 - 7120616
Alignment:
Q  266 agtgagttgcctgattgcgttttacttcacattctgtcttttttggacaccaaacttgctgttcaaacttgcatactgtccgcgagatggaagaatcttt 365  Q
    ||||| || |||||||| |||||||||||||| || ||||||||| ||||||||   || |||||||||||  |  |||||   |||||||||||||| |    
T  7120720 agtgatttacctgattgtgttttacttcacatactctcttttttgaacaccaaatacgcagttcaaacttgtgttttgtccaaaagatggaagaatctct 7120621  T
Q  366 ggaag 370  Q
    |||||    
T  7120620 ggaag 7120616  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 370
Target Start/End: Complemental strand, 7124124 - 7124020
Alignment:
Q  266 agtgagttgcctgattgcgttttacttcacattctgtcttttttggacaccaaacttgctgttcaaacttgcatactgtccgcgagatggaagaatcttt 365  Q
    ||||| || |||||||| |||||||||||||| || ||||||||| ||||||||   || |||||||||||  |  |||||   |||||||||||||| |    
T  7124124 agtgatttacctgattgtgttttacttcacatactctcttttttgaacaccaaatacgcagttcaaacttgtgttttgtccaaaagatggaagaatctct 7124025  T
Q  366 ggaag 370  Q
    |||||    
T  7124024 ggaag 7124020  T

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