View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13968_low_8 (Length: 399)
Name: NF13968_low_8
Description: NF13968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13968_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 12 - 380
Target Start/End: Original strand, 8757412 - 8757780
Alignment:
| Q |
12 |
acagaatcaagggcgttgttgtgttttgctgttttgcttgagaaaggacctgaggctgtgcaatacaattccgcgatggcgttgatggagattactgctg |
111 |
Q |
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| T |
8757412 |
acagaatcaagggcgttgttgtgtttttctgttttgcttgagaaaggaccggaggctgtgcaatacaattccgcgatggcgttgatggagattactgctg |
8757511 |
T |
|
| Q |
112 |
tggctgagaaagatgctgaattgaggaaatctgcattcaagcctaattctcctgcctgcaaagcagttgttgatcaagtgcttaagataattgagaaagc |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8757512 |
tggctgagaaagatgctgaattgaggaaatctgcattcaagcctaattctcctgcctgcaaagcagttgttgatcaagtgcttaagataattgagaaagc |
8757611 |
T |
|
| Q |
212 |
agattcagatcttctcataccgtgtgtcaaggcgattgggaatttggcaaggacattcaaggctaccgagacaaggatgatcggtccattggtaaaactt |
311 |
Q |
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| T |
8757612 |
agattcagatcttctcataccgtgtgtcaaggcgattgggaatttggcaaggacattcaaggctaccgagacaaggatgatcggtccattggtaaaactt |
8757711 |
T |
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| Q |
312 |
cttgatgaaagagaggcagaggtttcaagggaggcgtcaatcgcgcttaggaaattcgctggtagtgaa |
380 |
Q |
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| T |
8757712 |
cttgatgaaagagaggcagaggtttcaagggaggcgtcaatcgcgcttaggaaattcgccggcagtgaa |
8757780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 15 - 328
Target Start/End: Complemental strand, 32031047 - 32030734
Alignment:
| Q |
15 |
gaatcaagggcgttgttgtgttttgctgttttgcttgagaaaggacctgaggctgtgcaatacaattccgcgatggcgttgatggagattactgctgtgg |
114 |
Q |
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| T |
32031047 |
gaatcaagggctttgttatgttttgctattctacttgaaaaagggcctgaagaagtgaagtacaattctgctttggcgttgaaagagattactgcagtgg |
32030948 |
T |
|
| Q |
115 |
ctgagaaagatgctgaattgaggaaatctgcattcaagcctaattctcctgcctgcaaagcagttgttgatcaagtgcttaagataattgagaaagcaga |
214 |
Q |
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||||||||||| |||||||||| | ||| || || ||||| || | ||||| || ||||| ||||||||||||||| || | || ||||| |||| ||| |
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| T |
32030947 |
ctgagaaagatcctgaattgagaagatcggcgtttaagccaaacacccctgcttgtaaagcggttgttgatcaagtgattgatattattgacaaagaaga |
32030848 |
T |
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| Q |
215 |
ttcaga-tcttctcataccgtgtgtcaaggcgattgggaatttggcaaggacattcaaggctaccgagacaaggatgatcggtccattggtaaaacttct |
313 |
Q |
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| ||| ||| | || || ||| |||||| ||||||| |||||| |||||||||| ||| || ||||||||||| || ||||| ||||| |||||| |
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| T |
32030847 |
-taagagacttttgattccttgtatcaaggttattgggagtttggctaggacattcagggcaactgagacaaggataattggtccgttggttcgacttct |
32030749 |
T |
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| Q |
314 |
tgatgaaagagaggc |
328 |
Q |
| |
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||| ||||||||||| |
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| T |
32030748 |
tgacgaaagagaggc |
32030734 |
T |
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