View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1396_high_10 (Length: 417)
Name: NF1396_high_10
Description: NF1396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1396_high_10 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
| |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 13 - 417
Target Start/End: Original strand, 4652319 - 4652733
Alignment:
| Q |
13 |
aatattgtcgactccaacaaaaatgccaaaaggcatattataagtatgtaccttgtaagtagtct-----gcaacatcatctccattacgttggtacaat |
107 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
4652319 |
aatattgtcgattccaacaaaaatgccaaaaggcatattataagtatgtaccttgtaaatagtctcaaatgcaacatcatctccattacgttggtacaat |
4652418 |
T |
|
| Q |
108 |
tcaaaacaat-----gatgtggagaccaaaatatattttctagtcttttttctttatcaacagtgaatgcaaattggaagcatgagttttcatccttgga |
202 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
4652419 |
tcaaaacaatataatgatgtggagaccaaaatatattttctagtcttttttctttatcaacagtaaatacaaattggaagcatgagttttcatccttgga |
4652518 |
T |
|
| Q |
203 |
aaacttacaaagtcgtaaaagatcattaacatcaccattcatgttatcttgatgaatcttattaaagaaattgtgaatatcttttcgaagaaatcgaaga |
302 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4652519 |
aaacttacaaagttgtaaaagatcattaacatcaccattcatgttatcttgatgaatcttattaaagaaattatgaatatcttttcgaagaaatcgaaga |
4652618 |
T |
|
| Q |
303 |
tctccatgttttacatttttctcaagctccataacacccattatttgtttgaccgaaagatcagcttcttttaatagcaatatccgcttctcatcttcct |
402 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||| |
|
|
| T |
4652619 |
tctccatgttttacgtttttctcaagctccataacacgcattatttgtttgaccgaaagatcagcttcttttaatagcaatattcgcttcccgtcttcct |
4652718 |
T |
|
| Q |
403 |
tagaaattttgcggt |
417 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
4652719 |
tagaaattttgcggt |
4652733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 16 - 417
Target Start/End: Original strand, 16149727 - 16150133
Alignment:
| Q |
16 |
attgtcgactccaacaaaaatgccaaaaggcatattataagtatgtaccttgtaagtagtct-----gcaacatcatctccattacgttggtacaattca |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||| ||||||||| |||||||||||||| |
|
|
| T |
16149727 |
attgtcgactccaacaaaaatgccaaaaggcatattataagtatttaccttgtaagtagtatcaaatgcaacagcatctccatactgttggtacaattca |
16149826 |
T |
|
| Q |
111 |
aaacaatgatgtggagaccaaaatatattttctagtcttttttctttatcaacagtgaatgcaaattggaagcatgagttttcatccttggaaaacttac |
210 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
16149827 |
aaacaatgaggtggagaccaaaatatattttctagtcttttttctttatcaaccgtaaattcaaattggaagcatgagttttcttccttggataacttac |
16149926 |
T |
|
| Q |
211 |
aaagtcgtaaaagatcattaacatcaccattcatgttatcttgatgaatcttattaaagaaattgtgaatatcttttcgaagaaatcgaagatctccatg |
310 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
16149927 |
aaagttgtaaaagatcattagcatcaccattcatgttatcttgatgaatcttattaaagaaattatgaatatctttctcaagaaatcgaagatctccatg |
16150026 |
T |
|
| Q |
311 |
ttttacatttttctcaagctccataacacccattatttgtttgaccgaaagatcagcttcttttaatagcaatatccgcttctcatcttccttagaaatt |
410 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| ||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
16150027 |
ttttacatttttctcaagctccataacacgcattatttgcttgactgaaagatcggcttcttttaatagcaatatccgcttctcttcttccttagaaatt |
16150126 |
T |
|
| Q |
411 |
ttgcggt |
417 |
Q |
| |
|
||||||| |
|
|
| T |
16150127 |
ttgcggt |
16150133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 8e-34; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 324 - 417
Target Start/End: Complemental strand, 23302271 - 23302178
Alignment:
| Q |
324 |
tcaagctccataacacccattatttgtttgaccgaaagatcagcttcttttaatagcaatatccgcttctcatcttccttagaaattttgcggt |
417 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
23302271 |
tcaagctccataacacgcattatttgcttgactgaaagatctgcttcttttaatagcaatatccgcttctcttcttccttagaaattttgcggt |
23302178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 23302332 - 23302273
Alignment:
| Q |
16 |
attgtcgactccaacaaaaatgccaaaaggcatattataagtatgtaccttgtaagtagt |
75 |
Q |
| |
|
|||||||| | ||||||| ||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
23302332 |
attgtcgattacaacaaagatgccaaaaggcatattataagtatttaccttgtaagtagt |
23302273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University