View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1396_high_13 (Length: 378)
Name: NF1396_high_13
Description: NF1396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1396_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 11 - 349
Target Start/End: Complemental strand, 44349154 - 44348816
Alignment:
| Q |
11 |
cagagaagatgaagccacaccaagttgtcatcaacatattgactaaagttgaagatataataccaaagtggaagatagttcccacaaaggatgtcatcaa |
110 |
Q |
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| T |
44349154 |
cagagaagatgaagccacaccaagttgtcatcaacatattgactaaagttgaagatataatacctaagtggaagatagttcccacaaaggatgtcatcaa |
44349055 |
T |
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| Q |
111 |
tttcgccttcaaagatccagccaaacgagaaagggtgaggttttttctcctttcttgtaaatatatctcaagttttttatttaatctataattgaggctt |
210 |
Q |
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| T |
44349054 |
tttcgctttcaaagatccggccaaacgagaaagggtgaggttttttctcctttcttgtaaatatatctcaagttttttatttaatctataattgaggctt |
44348955 |
T |
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| Q |
211 |
tcttaaaatgacttgaagtttagctaataatgtttcatttgatacacgacctcctttgacaatggttgcagataaggaaaaacaagttgatataccagga |
310 |
Q |
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| T |
44348954 |
tcttaaaatgacttgaagtttagctaataatgtttcatttgatacacgacctcctttgacaatggttgcagataaggaaaaacaagttgatataccagga |
44348855 |
T |
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| Q |
311 |
caagcccaggttaaaaacagcactagaaatgttaagaac |
349 |
Q |
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| T |
44348854 |
caagcccaggttaaaaacagcactagaaatgttaagaac |
44348816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 279 - 332
Target Start/End: Original strand, 39562320 - 39562373
Alignment:
| Q |
279 |
cagataaggaaaaacaagttgatataccaggacaagcccaggttaaaaacagca |
332 |
Q |
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| T |
39562320 |
cagataaggaaaaacaagttgatatatcaggacaagccaaggttaaaaacagca |
39562373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 148
Target Start/End: Original strand, 39562158 - 39562230
Alignment:
| Q |
76 |
aagtggaagatagttcccacaaaggatgtcatcaatttcgccttcaaagatccagccaaacgagaaagggtga |
148 |
Q |
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| T |
39562158 |
aagtggaaaatagttccgacaaaggatgtcatcgattcagccttcaaagatcacaccaaacgggaaatggtga |
39562230 |
T |
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