View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1396_low_13 (Length: 417)
Name: NF1396_low_13
Description: NF1396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1396_low_13 |
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| [»] chr6 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 13 - 417
Target Start/End: Original strand, 4652319 - 4652733
Alignment:
| Q |
13 |
aatattgtcgactccaacaaaaatgccaaaaggcatattataagtatgtaccttgtaagtagtct-----gcaacatcatctccattacgttggtacaat |
107 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
4652319 |
aatattgtcgattccaacaaaaatgccaaaaggcatattataagtatgtaccttgtaaatagtctcaaatgcaacatcatctccattacgttggtacaat |
4652418 |
T |
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| Q |
108 |
tcaaaacaat-----gatgtggagaccaaaatatattttctagtcttttttctttatcaacagtgaatgcaaattggaagcatgagttttcatccttgga |
202 |
Q |
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| T |
4652419 |
tcaaaacaatataatgatgtggagaccaaaatatattttctagtcttttttctttatcaacagtaaatacaaattggaagcatgagttttcatccttgga |
4652518 |
T |
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| Q |
203 |
aaacttacaaagtcgtaaaagatcattaacatcaccattcatgttatcttgatgaatcttattaaagaaattgtgaatatcttttcgaagaaatcgaaga |
302 |
Q |
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| T |
4652519 |
aaacttacaaagttgtaaaagatcattaacatcaccattcatgttatcttgatgaatcttattaaagaaattatgaatatcttttcgaagaaatcgaaga |
4652618 |
T |
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| Q |
303 |
tctccatgttttacatttttctcaagctccataacacccattatttgtttgaccgaaagatcagcttcttttaatagcaatatccgcttctcatcttcct |
402 |
Q |
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|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||| |
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| T |
4652619 |
tctccatgttttacgtttttctcaagctccataacacgcattatttgtttgaccgaaagatcagcttcttttaatagcaatattcgcttcccgtcttcct |
4652718 |
T |
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| Q |
403 |
tagaaattttgcggt |
417 |
Q |
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| T |
4652719 |
tagaaattttgcggt |
4652733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 16 - 417
Target Start/End: Original strand, 16149727 - 16150133
Alignment:
| Q |
16 |
attgtcgactccaacaaaaatgccaaaaggcatattataagtatgtaccttgtaagtagtct-----gcaacatcatctccattacgttggtacaattca |
110 |
Q |
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| T |
16149727 |
attgtcgactccaacaaaaatgccaaaaggcatattataagtatttaccttgtaagtagtatcaaatgcaacagcatctccatactgttggtacaattca |
16149826 |
T |
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| Q |
111 |
aaacaatgatgtggagaccaaaatatattttctagtcttttttctttatcaacagtgaatgcaaattggaagcatgagttttcatccttggaaaacttac |
210 |
Q |
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| T |
16149827 |
aaacaatgaggtggagaccaaaatatattttctagtcttttttctttatcaaccgtaaattcaaattggaagcatgagttttcttccttggataacttac |
16149926 |
T |
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| Q |
211 |
aaagtcgtaaaagatcattaacatcaccattcatgttatcttgatgaatcttattaaagaaattgtgaatatcttttcgaagaaatcgaagatctccatg |
310 |
Q |
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| T |
16149927 |
aaagttgtaaaagatcattagcatcaccattcatgttatcttgatgaatcttattaaagaaattatgaatatctttctcaagaaatcgaagatctccatg |
16150026 |
T |
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| Q |
311 |
ttttacatttttctcaagctccataacacccattatttgtttgaccgaaagatcagcttcttttaatagcaatatccgcttctcatcttccttagaaatt |
410 |
Q |
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| T |
16150027 |
ttttacatttttctcaagctccataacacgcattatttgcttgactgaaagatcggcttcttttaatagcaatatccgcttctcttcttccttagaaatt |
16150126 |
T |
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| Q |
411 |
ttgcggt |
417 |
Q |
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| T |
16150127 |
ttgcggt |
16150133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 8e-34; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 324 - 417
Target Start/End: Complemental strand, 23302271 - 23302178
Alignment:
| Q |
324 |
tcaagctccataacacccattatttgtttgaccgaaagatcagcttcttttaatagcaatatccgcttctcatcttccttagaaattttgcggt |
417 |
Q |
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| T |
23302271 |
tcaagctccataacacgcattatttgcttgactgaaagatctgcttcttttaatagcaatatccgcttctcttcttccttagaaattttgcggt |
23302178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 23302332 - 23302273
Alignment:
| Q |
16 |
attgtcgactccaacaaaaatgccaaaaggcatattataagtatgtaccttgtaagtagt |
75 |
Q |
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| T |
23302332 |
attgtcgattacaacaaagatgccaaaaggcatattataagtatttaccttgtaagtagt |
23302273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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