View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1396_low_16 (Length: 402)

Name: NF1396_low_16
Description: NF1396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1396_low_16
NF1396_low_16
[»] chr6 (15 HSPs)
chr6 (116-320)||(34063301-34063505)
chr6 (41-117)||(34063190-34063266)
chr6 (221-316)||(28466881-28466975)
chr6 (124-279)||(34620883-34621038)
chr6 (221-316)||(34736758-34736852)
chr6 (124-279)||(34748320-34748475)
chr6 (176-278)||(882735-882837)
chr6 (122-312)||(1485046-1485236)
chr6 (224-288)||(3798997-3799061)
chr6 (123-271)||(26280601-26280748)
chr6 (212-285)||(3809715-3809788)
chr6 (147-232)||(31305827-31305912)
chr6 (125-213)||(852530-852618)
chr6 (191-255)||(26492595-26492659)
chr6 (190-254)||(32888915-32888979)
[»] chr7 (8 HSPs)
chr7 (121-310)||(38123569-38123757)
chr7 (123-279)||(40561691-40561847)
chr7 (123-288)||(27571858-27572023)
chr7 (125-197)||(30182311-30182383)
chr7 (150-270)||(40491601-40491721)
chr7 (121-279)||(45557359-45557517)
chr7 (145-279)||(22310392-22310526)
chr7 (207-288)||(33853408-33853489)
[»] chr5 (2 HSPs)
chr5 (219-316)||(34250251-34250347)
chr5 (143-314)||(15873890-15874057)
[»] chr2 (4 HSPs)
chr2 (125-288)||(1976788-1976952)
chr2 (190-285)||(10918619-10918714)
chr2 (162-240)||(44439289-44439367)
chr2 (122-211)||(37420196-37420287)
[»] chr3 (6 HSPs)
chr3 (144-272)||(3776539-3776667)
chr3 (122-314)||(5406901-5407087)
chr3 (162-277)||(46853469-46853584)
chr3 (130-240)||(27266766-27266876)
chr3 (162-314)||(51285605-51285756)
chr3 (147-219)||(37703119-37703191)
[»] chr1 (7 HSPs)
chr1 (125-255)||(48548971-48549099)
chr1 (122-213)||(10324937-10325028)
chr1 (253-313)||(5868130-5868191)
chr1 (129-193)||(3515820-3515884)
chr1 (122-194)||(9939746-9939818)
chr1 (123-210)||(8381962-8382049)
chr1 (162-213)||(29988336-29988387)
[»] scaffold0361 (1 HSPs)
scaffold0361 (123-254)||(14072-14202)
[»] chr8 (5 HSPs)
chr8 (153-254)||(4950509-4950610)
chr8 (221-314)||(24774919-24775009)
chr8 (127-270)||(32927892-32928035)
chr8 (144-240)||(30098927-30099021)
chr8 (263-311)||(32837530-32837577)
[»] chr4 (4 HSPs)
chr4 (123-258)||(55927724-55927859)
chr4 (123-197)||(29904228-29904302)
chr4 (176-317)||(22683913-22684053)
chr4 (264-320)||(53158938-53158994)


Alignment Details
Target: chr6 (Bit Score: 161; Significance: 9e-86; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 116 - 320
Target Start/End: Original strand, 34063301 - 34063505
Alignment:
Q  116 ctcccgtagaattgattctactataaggtagaaattgtagcttctcattctagaattaacttttacaatcaaacttattgttaaacccacctttacataa 215  Q
    |||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  34063301 ctccggtagaattgattctactataagctagaaattgtaggttctcattctagaattaacttttacaatcaaacttattgttaaacccacttttacataa 34063400  T
Q  216 atatttccaaacataaaccactttagcttcaacccaattttaatcataatcaattcactcaaaaataattttttctcaccgtagaaccaaacatacacta 315  Q
    ||||  ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  | |||||||||||||| ||||||||||||||||    
T  34063401 atataaccaaacataaatcactttagcttcaacccaattttaatcataatcaattcactcaaaaaataatttttctcaccgtacaaccaaacatacacta 34063500  T
Q  316 aaatt 320  Q
    |||||    
T  34063501 aaatt 34063505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 41 - 117
Target Start/End: Original strand, 34063190 - 34063266
Alignment:
Q  41 aagatttcaataatcagagatgacaaaatcataagtgtaagtctggttctggttttggaggagccaatgttgattct 117  Q
    ||||||||||||||||||||| |||| ||||||||||||| |||||||| | ||||||||||||||| |||||||||    
T  34063190 aagatttcaataatcagagataacaatatcataagtgtaattctggttccgcttttggaggagccaacgttgattct 34063266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 221 - 316
Target Start/End: Complemental strand, 28466975 - 28466881
Alignment:
Q  221 tccaaacataaaccactttagcttcaacccaattttaatcataatcaattcactcaaaaataattttttctcaccgtagaaccaaacatacactaa 316  Q
    ||||||||||||||||| || ||||||| ||||||||  || ||||||||||||| ||||| |||||||||| ||| |||||||||||||||||||    
T  28466975 tccaaacataaaccactataccttcaactcaattttagccagaatcaattcactc-aaaatcattttttctcgccgcagaaccaaacatacactaa 28466881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 124 - 279
Target Start/End: Original strand, 34620883 - 34621038
Alignment:
Q  124 gaattgattctactataaggtagaaattgtagcttctcattctagaattaacttttacaatcaaacttattgttaaacccacctttacataaatatttcc 223  Q
    |||||||||||||   ||| |||||||  |||||||| ||||||||||| | ||||||| | ||| ||||| || ||| ||| ||||||||||| | |||    
T  34620883 gaattgattctacatgaagctagaaatcatagcttctgattctagaattgatttttacactaaaatttatttttcaactcacttttacataaatgtatcc 34620982  T
Q  224 aaacataaaccactttagcttcaacccaattttaatcataatcaattcactcaaaa 279  Q
    ||||||||| ||||||| ||||||| ||||| ||  || |||| ||||||||||||    
T  34620983 aaacataaatcactttaccttcaactcaattctagccagaatccattcactcaaaa 34621038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 221 - 316
Target Start/End: Original strand, 34736758 - 34736852
Alignment:
Q  221 tccaaacataaaccactttagcttcaacccaattttaatcataatcaattcactcaaaaataattttttctcaccgtagaaccaaacatacactaa 316  Q
    ||||||||||||||||| || ||||||| ||||||||  || ||||||||||||| ||||| |||||||||| ||| |||||||||||||||||||    
T  34736758 tccaaacataaaccactataccttcaactcaattttagccagaatcaattcactc-aaaatcattttttctcgccgcagaaccaaacatacactaa 34736852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 124 - 279
Target Start/End: Original strand, 34748320 - 34748475
Alignment:
Q  124 gaattgattctactataaggtagaaattgtagcttctcattctagaattaacttttacaatcaaacttattgttaaacccacctttacataaatatttcc 223  Q
    |||||||||||||   ||| |||||||  |||||||| ||||||||||| | ||||||| | ||| ||||| || ||| ||| ||||||||||| | |||    
T  34748320 gaattgattctacatgaagctagaaatcatagcttctgattctagaattgatttttacactaaaatttatttttcaactcacttttacataaatgtatcc 34748419  T
Q  224 aaacataaaccactttagcttcaacccaattttaatcataatcaattcactcaaaa 279  Q
    ||||||||| ||||||| ||||||| ||||| ||  || |||| ||||||||||||    
T  34748420 aaacataaatcactttaccttcaactcaattctagccagaatccattcactcaaaa 34748475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 176 - 278
Target Start/End: Original strand, 882735 - 882837
Alignment:
Q  176 ttttacaatcaaacttattgttaaacccacctttacataaatatttccaaacataaaccactttagcttcaacccaattttaatcataatcaattcactc 275  Q
    ||||||| ||||| |||||||| ||| ||| ||| ||| ||| | |||||||||||| || |||| ||||||| |||||||||  | |||||||||||||    
T  882735 ttttacattcaaatttattgtttaactcacttttgcatgaatgtatccaaacataaatcattttaccttcaactcaattttaactagaatcaattcactc 882834  T
Q  276 aaa 278  Q
    |||    
T  882835 aaa 882837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 122 - 312
Target Start/End: Complemental strand, 1485236 - 1485046
Alignment:
Q  122 tagaattgattctactataaggtagaaattgtagcttctcattctagaattaacttttacaatcaaacttattgttaaacccacctttacataaatattt 221  Q
    ||||||||||||||||  ||  ||||||||| ||||| | ||||||||||| | ||| ||| ||||| |||||||| ||| ||| ||||||||| | | |    
T  1485236 tagaattgattctacttgaatctagaaattggagcttttgattctagaattgattttaacactcaaatttattgttcaactcacttttacataagtgtat 1485137  T
Q  222 ccaaacataaaccactttagcttcaacccaattttaatcataatcaattcactcaaaaataattttttctcaccgtagaaccaaacataca 312  Q
    |||||| |||| ||||  |  || ||| || |||||   | |||||||||| | ||||| |||||||| ||| ||  ||||||||||||||    
T  1485136 ccaaacgtaaatcactcaactttaaactcacttttagctagaatcaattcattaaaaaacaattttttatcaacgctgaaccaaacataca 1485046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 288
Target Start/End: Original strand, 3798997 - 3799061
Alignment:
Q  224 aaacataaaccactttagcttcaacccaattttaatcataatcaattcactcaaaaataattttt 288  Q
    ||||||||| || |||| ||||||| || ||||||||| |||||||||||| ||| |||||||||    
T  3798997 aaacataaatcattttatcttcaactcacttttaatcagaatcaattcacttaaatataattttt 3799061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 271
Target Start/End: Original strand, 26280601 - 26280748
Alignment:
Q  123 agaattgattctactataaggtagaaattgtagcttctcattctagaattaacttttacaatcaaacttattgttaaacccacctttacataaatatttc 222  Q
    ||||||||||| |||  ||| ||||| |||||| || | |||| | |||| | ||||||   |||| |||| ||||||| ||| |||||||||  || ||    
T  26280601 agaattgattccacttgaagctagaatttgtagtttttgattccaaaattgatttttacgtacaaatttatagttaaactcacttttacataac-atatc 26280699  T
Q  223 caaacataaaccactttagcttcaacccaattttaatcataatcaattc 271  Q
     |||||||||  | |||| |||||||||| |||||||||||||||||||    
T  26280700 taaacataaattattttaccttcaacccacttttaatcataatcaattc 26280748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 285
Target Start/End: Original strand, 3809715 - 3809788
Alignment:
Q  212 ataaatatttccaaacataaaccactttagcttcaacccaattttaatcataatcaattcactcaaaaataatt 285  Q
    |||||| | |||||||||||| |||| || ||| ||| || ||||||||||||| |||| ||| ||||||||||    
T  3809715 ataaatgtatccaaacataaatcactgtatctttaactcacttttaatcataattaatttactgaaaaataatt 3809788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 232
Target Start/End: Complemental strand, 31305912 - 31305827
Alignment:
Q  147 aaattgtagcttctcattctagaattaacttttacaatcaaacttattgttaaacccacctttacataaatatttccaaacataaa 232  Q
    |||||| ||||| | ||||||||||| | || |||| ||||| |||||| | ||| ||| ||||||| ||||| ||||||||||||    
T  31305912 aaattggagcttttgattctagaattgatttatacactcaaatttattgatcaactcacttttacattaatatatccaaacataaa 31305827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 213
Target Start/End: Original strand, 852530 - 852618
Alignment:
Q  125 aattgattctactataaggtagaaattgtagcttctcattctagaattaacttttacaatcaaacttattgttaaacccacctttacat 213  Q
    ||||||||| |||  ||| |||||||||||| |||| ||||||||||| | |||||||  ||||  ||||||| ||| ||| |||||||    
T  852530 aattgattcaacttgaagctagaaattgtaggttctgattctagaattgatttttacacccaaatgtattgtttaactcacttttacat 852618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 191 - 255
Target Start/End: Original strand, 26492595 - 26492659
Alignment:
Q  191 tattgttaaacccacctttacataaatatttccaaacataaaccactttagcttcaacccaattt 255  Q
    ||||||| || |||| | ||||||||||| |||||||||||| |||||||  |||||| ||||||    
T  26492595 tattgttcaatccacgtatacataaatatatccaaacataaaacactttacattcaactcaattt 26492659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 190 - 254
Target Start/End: Complemental strand, 32888979 - 32888915
Alignment:
Q  190 ttattgttaaacccacctttacataaatatttccaaacataaaccactttagcttcaacccaatt 254  Q
    |||||||| ||| ||| ||||||||||||| | |||||||||| || |||| ||||||| |||||    
T  32888979 ttattgttcaactcacttttacataaatatattcaaacataaatcattttatcttcaactcaatt 32888915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 8e-34; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 121 - 310
Target Start/End: Complemental strand, 38123757 - 38123569
Alignment:
Q  121 gtagaattgattctactataaggtagaaattgtagcttctcattctagaattaacttttacaatcaaacttattgttaaacccacctttacataaatatt 220  Q
    |||||||||||||||||  ||| ||||||||||||||||| ||||||||||| | ||||||| ||||| |||||| | ||| ||| ||||||| ||| |     
T  38123757 gtagaattgattctacttgaagctagaaattgtagcttctaattctagaattgatttttacactcaaatttattggtcaactcacttttacatgaatgtg 38123658  T
Q  221 tccaaacataaaccactttagcttcaacccaattttaatcataatcaattcactcaaaaataattttttctcaccgtagaaccaaacata 310  Q
    ||| |||| |||  |||||| ||||||| |||||||| |||||||||||| |||||||| | | | |||||||||| |||||||||||||    
T  38123657 tccgaacacaaattactttaccttcaactcaattttagtcataatcaatttactcaaaattta-tatttctcaccgcagaaccaaacata 38123569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 123 - 279
Target Start/End: Complemental strand, 40561847 - 40561691
Alignment:
Q  123 agaattgattctactataaggtagaaattgtagcttctcattctagaattaacttttacaatcaaacttattgttaaacccacctttacataaatatttc 222  Q
    |||||||||||||||  ||| |||||||||||| || | | ||||||||||| || |||| |||||  ||||||| ||| ||| ||||||| ||| | ||    
T  40561847 agaattgattctacttgaagttagaaattgtagtttgtaagtctagaattaatttatacactcaaatatattgttcaactcacttttacatgaatgtatc 40561748  T
Q  223 caaacataaaccactttagcttcaacccaattttaatcataatcaattcactcaaaa 279  Q
    |||||||||| |||||||  |||||| ||||||| |  | |||||||||||||||||    
T  40561747 caaacataaatcactttactttcaactcaatttttactagaatcaattcactcaaaa 40561691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 123 - 288
Target Start/End: Original strand, 27571858 - 27572023
Alignment:
Q  123 agaattgattctactataaggtagaaattgtagcttctcattctagaattaacttttacaatcaaacttattgttaaacccacctttacataaatatttc 222  Q
    |||||||||||||||  ||| ||||||||| ||||| | ||||||||||| | ||| ||| ||||  ||||| || ||| ||| ||||||||||| | ||    
T  27571858 agaattgattctacttgaagttagaaattggagcttttgattctagaattgattttaacactcaagtttattattcaactcacatttacataaatgtatc 27571957  T
Q  223 caaacataaaccactttagcttcaacccaattttaatcataatcaattcactcaaaaataattttt 288  Q
    ||| |||||| || |||| ||| ||| || |||||  |||||||||||||| |||||  |||||||    
T  27571958 caaccataaatcattttacctttaactcacttttagccataatcaattcacccaaaatcaattttt 27572023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 125 - 197
Target Start/End: Complemental strand, 30182383 - 30182311
Alignment:
Q  125 aattgattctactataaggtagaaattgtagcttctcattctagaattaacttttacaatcaaacttattgtt 197  Q
    |||||||||||||  ||| || |||||||||||| | ||||||||||||| ||||||| ||||| ||||||||    
T  30182383 aattgattctacttgaagctaaaaattgtagcttttgattctagaattaatttttacactcaaatttattgtt 30182311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 150 - 270
Target Start/End: Original strand, 40491601 - 40491721
Alignment:
Q  150 ttgtagcttctcattctagaattaacttttacaatcaaacttattgttaaacccacctttacataaatatttccaaacataaaccactttagcttcaacc 249  Q
    ||||||||| | ||||||||||| |||||||||  |||| |||  ||| ||| ||| ||||||| ||| | |||||| ||||| ||||||| |||||||     
T  40491601 ttgtagcttttgattctagaattgacttttacacacaaatttaaagtttaactcacttttacatgaatgtatccaaaaataaatcactttaccttcaact 40491700  T
Q  250 caattttaatcataatcaatt 270  Q
    || ||||| ||| ||||||||    
T  40491701 cacttttagtcaaaatcaatt 40491721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 121 - 279
Target Start/End: Original strand, 45557359 - 45557517
Alignment:
Q  121 gtagaattgattctactataaggtagaaattgtagcttctcattctagaattaacttttacaatcaaacttattgttaaacccacctttacataaatatt 220  Q
    |||||||||||| | ||| ||| |||||  |||||||| | ||||||| ||| | |||||||  |||| || | | | ||| ||| ||||||| ||| |     
T  45557359 gtagaattgattttgctagaagctagaatctgtagcttttaattctaggattgatttttacacacaaatttgtagctcaactcacttttacatgaatgta 45557458  T
Q  221 tccaaacataaaccactttagcttcaacccaattttaatcataatcaattcactcaaaa 279  Q
    |||||||| ||| ||||||| ||||||| || ||||| ||| |||||||||| ||||||    
T  45557459 tccaaacacaaatcactttaccttcaactcacttttagtcagaatcaattcattcaaaa 45557517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 279
Target Start/End: Complemental strand, 22310526 - 22310392
Alignment:
Q  145 agaaattgtagcttctcattctagaattaacttttacaatcaaacttattgttaaacccacctttacataaatatttccaaacataaaccactttagctt 244  Q
    ||||||| |||||||| ||||||||||||| ||||||| | ||| ||||| || ||  ||| |||||   ||| | |||||||||||| |  |||| |||    
T  22310526 agaaattatagcttctaattctagaattaatttttacacttaaatttatttttcaattcacttttacgagaatgtatccaaacataaatctttttatctt 22310427  T
Q  245 caacccaattttaatcataatcaattcactcaaaa 279  Q
    |||| ||||||| | || | ||||| |||||||||    
T  22310426 caactcaatttttaccaaactcaatccactcaaaa 22310392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 288
Target Start/End: Complemental strand, 33853489 - 33853408
Alignment:
Q  207 tttacataaatatttccaaacataaaccactttagcttcaacccaattttaatcataatcaattcactcaaaaataattttt 288  Q
    ||||||| ||| | |||||||||||| ||||||||||||||| || | |||  || |||||||||||| ||||  |||||||    
T  33853489 tttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatcaattttt 33853408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 219 - 316
Target Start/End: Complemental strand, 34250347 - 34250251
Alignment:
Q  219 tttccaaacataaaccactttagcttcaacccaattttaatcataatcaattcactcaaaaataattttttctcaccgtagaaccaaacatacactaa 316  Q
    |||||||||||||| ||||||||||||||| ||||| || ||| ||||||||||||| ||||| | |||||||||||||||||| ||||| |||||||    
T  34250347 tttccaaacataaatcactttagcttcaactcaattatagtcaaaatcaattcactc-aaaatcaatttttctcaccgtagaactaaacacacactaa 34250251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 143 - 314
Target Start/End: Complemental strand, 15874057 - 15873890
Alignment:
Q  143 gtagaaattgtagcttctcattctagaattaacttttacaatcaaacttattgttaaacccacctttacataaatatttccaaacataaaccactttagc 242  Q
    |||||||||||||||| | |||||||||||   ||||||| | | | |||||||||||  ||| ||||||| | ||| ||||||||||||| | | || |    
T  15874057 gtagaaattgtagcttttgattctagaattgctttttacact-agagttattgttaaattcacttttacatgagtatatccaaacataaactattatacc 15873959  T
Q  243 ttcaacccaattttaatcataatcaattcactcaaaaataattttttctcaccgtagaaccaaacatacact 314  Q
    |||||| |||||||   || |||||||| ||||   ||| | |||||||||  ||||||| |||||||||||    
T  15873958 ttcaactcaatttttgccagaatcaatttactc---aattaatttttctcattgtagaacgaaacatacact 15873890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 125 - 288
Target Start/End: Complemental strand, 1976952 - 1976788
Alignment:
Q  125 aattgattctactataaggtagaaattgtagcttctcattctagaattaactttt--acaatcaaacttattgttaaacccacctttacataaatatttc 222  Q
    |||||||||||||||||  ||||| ||||| ||||| ||||||||||| | ||||  ||| ||||| |||||||| ||| ||| ||||||| ||| | ||    
T  1976952 aattgattctactataaactagaa-ttgtaacttctaattctagaattgatttttttacactcaaatttattgttgaactcacttttacatgaatgtatc 1976854  T
Q  223 caaacataaaccactttagcttcaacccaattttaatcataatcaattcactcaaaaataattttt 288  Q
    |||||||||  | ||||| ||||||| ||||| ||  || |||||||||||||||||| |||||||    
T  1976853 caaacataagtcgctttaccttcaactcaattctagccagaatcaattcactcaaaaacaattttt 1976788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 190 - 285
Target Start/End: Original strand, 10918619 - 10918714
Alignment:
Q  190 ttattgttaaacccacctttacataaatatttccaaacataaaccactttagcttcaacccaattttaatcataatcaattcactcaaaaataatt 285  Q
    ||||||| ||| |||| |||||| |||||  |||||||||||| |||||||  |||||| || |||||  || |||||||||| |||||| |||||    
T  10918619 ttattgtcaaatccacttttacacaaatacatccaaacataaatcactttacattcaactcacttttatccaaaatcaattcagtcaaaattaatt 10918714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 240
Target Start/End: Original strand, 44439289 - 44439367
Alignment:
Q  162 attctagaattaacttttacaatcaaacttattgttaaacccacctttacataaatatttccaaacataaaccacttta 240  Q
    |||||| |||| | ||| ||| ||||| |||||||| ||| ||| |||||||||| || |||||||||||| |||||||    
T  44439289 attctaaaattgattttaacactcaaatttattgttcaactcacttttacataaacatatccaaacataaatcacttta 44439367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 122 - 211
Target Start/End: Complemental strand, 37420287 - 37420196
Alignment:
Q  122 tagaattgattctactataaggtagaaattgtagcttctcat--tctagaattaacttttacaatcaaacttattgttaaacccacctttac 211  Q
    ||||||||||||||||| ||  |||||| |||||||||| ||  ||||||||| | ||||||| ||||| ||||| || ||| ||| |||||    
T  37420287 tagaattgattctactagaatctagaaaatgtagcttctaattctctagaattgatttttacactcaaatttattattcaactcacttttac 37420196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 144 - 272
Target Start/End: Original strand, 3776539 - 3776667
Alignment:
Q  144 tagaaattgtagcttctcattctagaattaacttttacaatcaaacttattgttaaacccacctttacataaatatttccaaacataaaccactttagct 243  Q
    ||||||||||||||||| ||||||||||||| ||||||| ||||| || ||| | ||| ||| ||||||| ||| | ||||| |||||| |||||||  |    
T  3776539 tagaaattgtagcttctgattctagaattaatttttacactcaaatttgttgctgaactcacttttacatcaatgtatccaagcataaatcactttacat 3776638  T
Q  244 tcaacccaattttaatcataatcaattca 272  Q
    ||||| ||||||||  || ||||||||||    
T  3776639 tcaactcaattttagccagaatcaattca 3776667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 122 - 314
Target Start/End: Original strand, 5406901 - 5407087
Alignment:
Q  122 tagaattgattctactataaggtagaaattgtagcttctcattctagaattaacttttacaatcaaacttattgttaaacccacctttacataaatattt 221  Q
    |||||| |||||||||  ||| ||||||| ||||||||| ||| ||||||| | ||||| |  |||| ||| | || ||  ||| ||||||| ||| | |    
T  5406901 tagaatggattctactcgaagctagaaatggtagcttctgattatagaattgatttttaaa--caaatttactcttcaaatcacttttacatgaatgtat 5406998  T
Q  222 ccaaacataaaccactttagcttcaacccaattttaatcataatcaattcactcaaaaataattttttctcaccgtagaaccaaacatacact 314  Q
    ||||||||||    ||||| ||||||| ||||||||   | |||||||||||||||||  ||||||||||||||  | |||||||||||||||    
T  5406999 ccaaacataa----ctttaccttcaactcaattttagctagaatcaattcactcaaaatcaattttttctcaccacataaccaaacatacact 5407087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 162 - 277
Target Start/End: Complemental strand, 46853584 - 46853469
Alignment:
Q  162 attctagaattaacttttacaatcaaacttattgttaaacccacctttacataaatatttccaaacataaaccactttagcttcaacccaattttaatca 261  Q
    ||||||||||| | ||| ||| ||||| |||||||| ||| ||| ||||||||||||| |||  ||||||| ||||||| |||||||  | || ||  ||    
T  46853584 attctagaattgattttaacactcaaatttattgttcaactcacttttacataaatatatcctgacataaatcactttaccttcaacttacttgtagcca 46853485  T
Q  262 taatcaattcactcaa 277  Q
     |||||||||||||||    
T  46853484 aaatcaattcactcaa 46853469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 240
Target Start/End: Complemental strand, 27266876 - 27266766
Alignment:
Q  130 attctactataaggtagaaattgtagcttctcattctagaattaacttttacaatcaaacttattgttaaacccacctttacataaatatttccaaacat 229  Q
    ||||||||  ||| ||||||||||||||  | |||| |||||||| ||||||| ||||| |||||||| |||  || ||||||| || || || ||||||    
T  27266876 attctacttgaagctagaaattgtagctaatgattcaagaattaatttttacactcaaatttattgttcaactaacttttacatgaaaatatctaaacat 27266777  T
Q  230 aaaccacttta 240  Q
    ||| |||||||    
T  27266776 aaatcacttta 27266766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 314
Target Start/End: Original strand, 51285605 - 51285756
Alignment:
Q  162 attctagaattaacttttacaatcaaacttattgttaaacccacctttacataaatatttccaaacataaaccactttagcttcaacccaattttaatca 261  Q
    ||||||||||| | |||| || ||||| || ||||| ||||| | ||||||| ||| | ||||| ||| ||  ||||||  |||||| || |||||  ||    
T  51285605 attctagaattgatttttgcactcaaatttgttgtttaacccgcttttacatgaatgtatccaagcatgaattactttacattcaactcacttttagcca 51285704  T
Q  262 taatcaattcactcaaaaataattttttctcaccgtagaaccaaacatacact 314  Q
    |||| ||||||||| ||||| | |||||||||||| | ||||||||| |||||    
T  51285705 taataaattcactc-aaaatcaatttttctcaccgcaaaaccaaacacacact 51285756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 219
Target Start/End: Original strand, 37703119 - 37703191
Alignment:
Q  147 aaattgtagcttctcattctagaattaacttttacaatcaaacttattgttaaacccacctttacataaatat 219  Q
    |||||||| ||||| ||| || |||||| ||||||| ||||| |||||||| ||  ||| |||||||||||||    
T  37703119 aaattgtaacttcttattttaaaattaatttttacactcaaatttattgttcaattcacttttacataaatat 37703191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 125 - 255
Target Start/End: Complemental strand, 48549099 - 48548971
Alignment:
Q  125 aattgattctactataaggtagaaattgtagcttctcattctagaattaacttttacaatcaaacttattgttaaacccacctttacataaatatttcca 224  Q
    |||||||||||||  ||| ||||||||||||||||| ||||||||||| | ||||| | ||  | |||||||| ||| ||| ||||||||||| | || |    
T  48549099 aattgattctacttgaagctagaaattgtagcttctgattctagaattgatttttaaactc--atttattgttcaactcacttttacataaatgtatcaa 48549002  T
Q  225 aacataaaccactttagcttcaacccaattt 255  Q
    |||||||| || |||| ||||||| ||||||    
T  48549001 aacataaatcattttaccttcaactcaattt 48548971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 122 - 213
Target Start/End: Complemental strand, 10325028 - 10324937
Alignment:
Q  122 tagaattgattctactataaggtagaaattgtagcttctcattctagaattaacttttacaatcaaacttattgttaaacccacctttacat 213  Q
    ||||||||| ||||||  ||| ||||||||||||||| | |||||| |||| | ||||||| ||||| ||||||||| || ||| |||||||    
T  10325028 tagaattgagtctacttgaagatagaaattgtagcttttgattctataattgatttttacactcaaatttattgttatactcacttttacat 10324937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 253 - 313
Target Start/End: Complemental strand, 5868191 - 5868130
Alignment:
Q  253 ttttaatcataatcaattcactcaaaaat-aattttttctcaccgtagaaccaaacatacac 313  Q
    ||||| ||||||||||||||||||||||| |||| ||| |||| | ||||||||||||||||    
T  5868191 ttttagtcataatcaattcactcaaaaatcaattctttatcacggcagaaccaaacatacac 5868130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 193
Target Start/End: Original strand, 3515820 - 3515884
Alignment:
Q  129 gattctactataaggtagaaattgtagcttctcattctagaattaacttttacaatcaaacttat 193  Q
    |||||||||  ||| ||||||||||||||| ||||||||||||| | ||||||| ||||| ||||    
T  3515820 gattctacttgaagctagaaattgtagcttttcattctagaattgatttttacactcaaaattat 3515884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 194
Target Start/End: Complemental strand, 9939818 - 9939746
Alignment:
Q  122 tagaattgattctactataaggtagaaattgtagcttctcattctagaattaacttttacaatcaaacttatt 194  Q
    ||||||||||||||||||||| || |||||||||||||| ||||   |||| | ||||||| ||||| |||||    
T  9939818 tagaattgattctactataagctaaaaattgtagcttctaattccttaattgaattttacactcaaatttatt 9939746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 123 - 210
Target Start/End: Original strand, 8381962 - 8382049
Alignment:
Q  123 agaattgattctactataaggtagaaattgtagcttctcattctagaattaacttttacaatcaaacttattgttaaacccaccttta 210  Q
    |||||||||||||||  ||| ||||||||||||| |||  |||||||||| | ||||||| ||||  |||||||| ||| ||| ||||    
T  8381962 agaattgattctacttgaagctagaaattgtagcctctagttctagaattgatttttacattcaagtttattgttcaactcactttta 8382049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 162 - 213
Target Start/End: Original strand, 29988336 - 29988387
Alignment:
Q  162 attctagaattaacttttacaatcaaacttattgttaaacccacctttacat 213  Q
    |||||||||||||||||||||| |||||||||  || ||| |||||||||||    
T  29988336 attctagaattaacttttacaaacaaacttatgtttgaactcacctttacat 29988387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 123 - 254
Target Start/End: Complemental strand, 14202 - 14072
Alignment:
Q  123 agaattgattctactataaggtagaaattgtagcttctcattctagaattaacttttacaatcaaacttattgttaaacccacctttacataaatatttc 222  Q
    |||||||||||||||  ||| ||| |||  |||||| | ||||||||||| | ||||||| ||||| ||||| || ||| ||| || |||| ||| | ||    
T  14202 agaattgattctacttgaagctagcaatc-tagcttatgattctagaattgatttttacactcaaatttatttttcaactcactttcacatgaatgtatc 14104  T
Q  223 caaacataaaccactttagcttcaacccaatt 254  Q
    |||||||||| ||||||| ||||||| |||||    
T  14103 caaacataaatcactttaccttcaactcaatt 14072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 153 - 254
Target Start/End: Original strand, 4950509 - 4950610
Alignment:
Q  153 tagcttctcattctagaattaacttttacaatcaaacttattgttaaacccacctttacataaatatttccaaacataaaccactttagcttcaacccaa 252  Q
    |||||| | ||||| ||||||| ||||||| | ||| ||||| || ||| ||| ||  ||||||||| |||||||||||| ||||||| ||||||| |||    
T  4950509 tagcttatgattcttgaattaatttttacacttaaatttatttttcaactcactttctcataaatatatccaaacataaatcactttaccttcaactcaa 4950608  T
Q  253 tt 254  Q
    ||    
T  4950609 tt 4950610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 221 - 314
Target Start/End: Complemental strand, 24775009 - 24774919
Alignment:
Q  221 tccaaacataaaccactttagcttcaacccaattttaatcataatcaattcactcaaaaataattttttctcaccgtagaaccaaacatacact 314  Q
    ||||||||||||| |||||| || |||| ||||||||  |  ||||||||| |||||   | | |||||||||||||||||||||| |||||||    
T  24775009 tccaaacataaactactttacctacaactcaattttagcctgaatcaattcgctcaa---ttaatttttctcaccgtagaaccaaaaatacact 24774919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 127 - 270
Target Start/End: Original strand, 32927892 - 32928035
Alignment:
Q  127 ttgattctactataaggtagaaattgtagcttctcattctagaattaacttttacaatcaaacttattgttaaacccacctttacataaatatttccaaa 226  Q
    |||||||||||  ||| ||| | ||||||||| | ||| ||||||| | |||||||  |||| |||| ||| ||| ||| ||||||| ||| | ||||||    
T  32927892 ttgattctacttgaagctaggatttgtagcttttgattatagaattcatttttacacacaaatttatagttcaactcacttttacatgaatgtatccaaa 32927991  T
Q  227 cataaaccactttagcttcaacccaattttaatcataatcaatt 270  Q
    || ||| ||||||  ||||||| |||||||| | | ||||||||    
T  32927992 cacaaatcactttgccttcaactcaattttagtaagaatcaatt 32928035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 240
Target Start/End: Original strand, 30098927 - 30099021
Alignment:
Q  144 tagaaattgtagcttctcattctagaattaacttttacaatcaaacttattgttaaacccacctttacataaatatttccaaacataaaccacttta 240  Q
    ||||| |||||||||   ||||||||||||| ||||||||  ||| |||| ||| ||| ||| ||||||||||||| ||| | |||||| |||||||    
T  30098927 tagaatttgtagctttcgattctagaattaatttttacaa--aaatttatagtttaactcacttttacataaatatatccgatcataaatcacttta 30099021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 311
Target Start/End: Original strand, 32837530 - 32837577
Alignment:
Q  263 aatcaattcactcaaaaataattttttctcaccgtagaaccaaacatac 311  Q
    |||||||||| |||||| |||||||| || |||||||||||||||||||    
T  32837530 aatcaattcaatcaaaattaatttttgct-accgtagaaccaaacatac 32837577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 123 - 258
Target Start/End: Complemental strand, 55927859 - 55927724
Alignment:
Q  123 agaattgattctactataaggtagaaattgtagcttctcattctagaattaacttttacaatcaaacttattgttaaacccacctttacataaatatttc 222  Q
    ||||||||||| |||  | | || |||||||||||||| ||||||||||| |   | ||| ||||| |||||||| ||  ||| ||||||| ||| | ||    
T  55927859 agaattgattccacttgaggctaaaaattgtagcttctgattctagaattgatcgtcacactcaaatttattgttcaagtcacttttacatgaatgtatc 55927760  T
Q  223 caaacataaaccactttagcttcaacccaattttaa 258  Q
    |||||||||| ||| ||| || |||| |||||||||    
T  55927759 caaacataaatcacattaactccaactcaattttaa 55927724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 197
Target Start/End: Original strand, 29904228 - 29904302
Alignment:
Q  123 agaattgattctactataaggtagaaattgtagcttctcattctagaattaacttttacaatcaaacttattgtt 197  Q
    |||||||||||||||  |||  |||||||||||||||| ||||||||| | |  |||||| ||||| ||||||||    
T  29904228 agaattgattctacttaaagcaagaaattgtagcttctaattctagaactgatgtttacactcaaatttattgtt 29904302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 317
Target Start/End: Original strand, 22683913 - 22684053
Alignment:
Q  176 ttttacaatcaaacttattgttaaacccacctttacataaatatttccaaacataaaccactttagcttcaacccaattttaatcataatcaattcactc 275  Q
    ||||||| | ||| |||||||| ||| | | ||||||||||| | ||||||||||||||| ||||  |||||| || ||||||  | |||||||||| ||    
T  22683913 ttttacattgaaatttattgttcaactcgcttttacataaatgtgtccaaacataaaccattttactttcaactcacttttaagtaaaatcaattca-tc 22684011  T
Q  276 aaaaataattttttctcaccgtagaaccaaacatacactaaa 317  Q
     |||||   ||||| |||| | |||||||||  |||||||||    
T  22684012 taaaatctatttttgtcactgcagaaccaaatgtacactaaa 22684053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 320
Target Start/End: Complemental strand, 53158994 - 53158938
Alignment:
Q  264 atcaattcactcaaaaataattttttctcaccgtagaaccaaacatacactaaaatt 320  Q
    ||||||||||||||||  || ||||| |||||| | ||||||||||||||| |||||    
T  53158994 atcaattcactcaaaatcaactttttgtcaccgcaaaaccaaacatacactcaaatt 53158938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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