View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1396_low_2 (Length: 596)
Name: NF1396_low_2
Description: NF1396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1396_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 464; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 22 - 501
Target Start/End: Original strand, 48887888 - 48888367
Alignment:
| Q |
22 |
catcatcagtttataagtcgtagtattatcaattctttacatcttggaataggatctagttctagcttgaaataagtattttgggttgagtaggtttcta |
121 |
Q |
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| T |
48887888 |
catcataagtttataagtcgtagtattatcaattctttacatcttggaatagtatctagttctagcttgaaataagtattttgggttgagtaggtttcta |
48887987 |
T |
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| Q |
122 |
tttccttattcaggttgtcatagaagacattctatatctgcagggaccatacgaattttgtcaactgtgttagatattctccagatgggagcaaattcgt |
221 |
Q |
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| T |
48887988 |
tttccttattcaggttgtcatagaagacattctatatctgcagggaccatacgaattttgtcaactgtgttagatattctccagatgggagcaaattcgt |
48888087 |
T |
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| Q |
222 |
tacagttagctcagataggaagggtattatatatgatggaaagactgggagtaaacttggagagttttctgaagaggacggtcacaagggcagcatatat |
321 |
Q |
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| T |
48888088 |
tacagttagctcagataggaagggtattatatatgatggaaagactgggagtaaacttggagagttttctgaagaggacggtcacaagggcagcatatat |
48888187 |
T |
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| Q |
322 |
gcagttagttggagtcctgacagtaaacaggtgaactccaggttgtgtttgaatgttactgttttattatgttgacattgataaaaatttcgtctttttt |
421 |
Q |
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| T |
48888188 |
gcagttagttggagtcgtgacagtaaacaggtgaactccaggttgtgtttgaatgttactgttttattatgttgacattgataaaaatttcgtctttttt |
48888287 |
T |
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| Q |
422 |
cttttggccagaattgtatataagattgcaatgtgaaatcgattctgtactggtttaacattcttgagagcttaatcacc |
501 |
Q |
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| T |
48888288 |
cttttggccagaattgtatataagattgcaatgtgaaatcgattctgtactggtttaacattgttgagagcttaatcacc |
48888367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 560 - 596
Target Start/End: Original strand, 48888425 - 48888461
Alignment:
| Q |
560 |
taaggaggaacatgttatgaatttatttgtgctattt |
596 |
Q |
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| T |
48888425 |
taaggaggaacatgttatgaatttatttgtgctattt |
48888461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 175 - 269
Target Start/End: Complemental strand, 45097962 - 45097868
Alignment:
| Q |
175 |
aattttgtcaactgtgttagatattctccagatgggagcaaattcgttacagttagctcagataggaagggtattatatatgatggaaagactgg |
269 |
Q |
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| T |
45097962 |
aattttgtcaattgtgtaagatattctccagatggcagtaaatttgtaactgttagttctgacaaaaagggtatcatattcgatggaaagactgg |
45097868 |
T |
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