View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1396_low_22 (Length: 349)
Name: NF1396_low_22
Description: NF1396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1396_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 165; Significance: 3e-88; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 54 - 309
Target Start/End: Complemental strand, 8434891 - 8434652
Alignment:
| Q |
54 |
tcaataacatcaagtgaattcttaccagtttcagcagcatcaattgatttctcaaaactctcactatcaatttcatatgaatcaaaagactcaggaagct |
153 |
Q |
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| T |
8434891 |
tcaacaacatcaggtgaattcttaccggtttcagtagcatcaattgatttctcaaaactctcactatcaatttcatatgaatcaaaagactcaggaagct |
8434792 |
T |
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| Q |
154 |
catttaaatcaaaaagatttttcagttttgcatgagacttcaaatcatcttcattagagttattagactccatgcccatgatatgtgagtacagaagata |
253 |
Q |
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| T |
8434791 |
cattcaaatcaaaaagatttttcagttttgcatgagacttcaaatcatcttcattagagttattagactccatgccc-----------------aagata |
8434709 |
T |
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| Q |
254 |
accataacacatcaaagtgaatgatgcatatattaatag-ttgttggcttgtgtgta |
309 |
Q |
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| T |
8434708 |
accataacacatgaaagtgaatgatgcatatattaatagcttgttggcatgtgtgta |
8434652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 166 - 321
Target Start/End: Original strand, 3817382 - 3817537
Alignment:
| Q |
166 |
aaagatttttcagttttgcatgagacttcaaatcatcttcattagagttattagactccatgcccatgatatgtgagtacagaagataaccataacacat |
265 |
Q |
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| T |
3817382 |
aaagatttttcagttttgtatgagacttcaaatcatcttcattagagttattagactccatgcccatgatatgtgagtacagaagataaccataacacat |
3817481 |
T |
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| Q |
266 |
caaagtgaatgatgcatatattaatagttgttggcttgtgtgtaccccgccaaata |
321 |
Q |
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| T |
3817482 |
caaagtgaatgatgcatatattaatagttgttggcttgtgtgtaccccgccaaata |
3817537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 192 - 321
Target Start/End: Complemental strand, 27149480 - 27149350
Alignment:
| Q |
192 |
ttcaaatcatcttcattagagttattagactccatgcccatgatatgtgagtacagaagataaccataacacatcaaagtgaatgatgcatatattaata |
291 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
27149480 |
ttcaaatcatcttcattagagttattagactccatgcccatgatatgtgagtagagaagataaccataacacatgaaagtgaatgatgcatatattaata |
27149381 |
T |
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| Q |
292 |
g-ttgttggcttgtgtgtaccccgccaaata |
321 |
Q |
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| T |
27149380 |
gcttgttggcctgtgtgtaccccgccaaata |
27149350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 54 - 174
Target Start/End: Original strand, 3811404 - 3811524
Alignment:
| Q |
54 |
tcaataacatcaagtgaattcttaccagtttcagcagcatcaattgatttctcaaaactctcactatcaatttcatatgaatcaaaagactcaggaagct |
153 |
Q |
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|||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3811404 |
tcaataacatcaagtgaattcttaccggtttcagcaacatcaattgatttctcaaaactctcactatcaatttcatatgaatcaaaagactcaggaagct |
3811503 |
T |
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| Q |
154 |
catttaaatcaaaaagatttt |
174 |
Q |
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|||| |||||||||||||||| |
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| T |
3811504 |
cattcaaatcaaaaagatttt |
3811524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 54 - 164
Target Start/End: Complemental strand, 27149582 - 27149472
Alignment:
| Q |
54 |
tcaataacatcaagtgaattcttaccagtttcagcagcatcaattgatttctcaaaactctcactatcaatttcatatgaatcaaaagactcaggaagct |
153 |
Q |
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|||||||||||| ||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |
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| T |
27149582 |
tcaataacatcaggtgaattcttaccgattttagtagcatcaattgatttctcaaaactctcactatcaatttcatatgaattcaaagattcaggaagct |
27149483 |
T |
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| Q |
154 |
catttaaatca |
164 |
Q |
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|||| |||||| |
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| T |
27149482 |
cattcaaatca |
27149472 |
T |
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