View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1396_low_25 (Length: 316)

Name: NF1396_low_25
Description: NF1396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1396_low_25
NF1396_low_25
[»] chr6 (8 HSPs)
chr6 (132-287)||(33771421-33771576)
chr6 (158-203)||(13852985-13853030)
chr6 (134-200)||(29443760-29443826)
chr6 (9-43)||(33771298-33771332)
chr6 (138-198)||(7887639-7887700)
chr6 (147-203)||(19750147-19750204)
chr6 (158-203)||(33464354-33464399)
chr6 (141-169)||(33770628-33770656)
[»] chr4 (8 HSPs)
chr4 (134-202)||(16499114-16499182)
chr4 (134-199)||(27749022-27749087)
chr4 (158-202)||(29337158-29337202)
chr4 (158-202)||(44891723-44891767)
chr4 (158-202)||(45258070-45258114)
chr4 (153-202)||(44057444-44057494)
chr4 (158-199)||(44892400-44892441)
chr4 (158-202)||(11146292-11146336)
[»] scaffold0421 (1 HSPs)
scaffold0421 (134-203)||(7262-7331)
[»] chr8 (13 HSPs)
chr8 (138-204)||(13545181-13545247)
chr8 (138-204)||(13679226-13679292)
chr8 (134-202)||(39220079-39220147)
chr8 (153-204)||(13544546-13544597)
chr8 (153-204)||(13679876-13679927)
chr8 (134-199)||(21120081-21120146)
chr8 (134-198)||(3528017-3528082)
chr8 (159-204)||(27709324-27709369)
chr8 (138-193)||(37355027-37355082)
chr8 (132-202)||(30248710-30248780)
chr8 (169-202)||(27710058-27710091)
chr8 (160-205)||(37354183-37354228)
chr8 (159-204)||(39217596-39217641)
[»] chr3 (9 HSPs)
chr3 (146-204)||(49976883-49976941)
chr3 (157-204)||(32998932-32998979)
chr3 (138-203)||(11884899-11884964)
chr3 (158-203)||(37628444-37628489)
chr3 (141-201)||(43276381-43276442)
chr3 (153-201)||(49283611-49283659)
chr3 (134-203)||(912702-912772)
chr3 (152-202)||(48676828-48676878)
chr3 (166-202)||(30626472-30626508)
[»] chr2 (10 HSPs)
chr2 (153-204)||(25331914-25331965)
chr2 (153-203)||(10343856-10343906)
chr2 (158-203)||(16497719-16497764)
chr2 (138-203)||(39384848-39384912)
chr2 (147-202)||(11590786-11590842)
chr2 (158-202)||(25332404-25332448)
chr2 (157-202)||(17768412-17768457)
chr2 (158-203)||(45627809-45627854)
chr2 (166-202)||(11590148-11590184)
chr2 (147-198)||(44553237-44553289)
[»] scaffold0220 (1 HSPs)
scaffold0220 (138-203)||(20600-20665)
[»] scaffold0187 (4 HSPs)
scaffold0187 (138-199)||(10544-10605)
scaffold0187 (138-199)||(20872-20933)
scaffold0187 (153-199)||(11001-11047)
scaffold0187 (153-199)||(21329-21375)
[»] chr5 (8 HSPs)
chr5 (153-199)||(40601412-40601458)
chr5 (151-203)||(41696959-41697011)
chr5 (158-204)||(2168084-2168130)
chr5 (138-199)||(40600732-40600793)
chr5 (163-203)||(30085799-30085839)
chr5 (158-202)||(43514495-43514539)
chr5 (151-202)||(41696071-41696122)
chr5 (158-204)||(43513816-43513862)
[»] chr1 (9 HSPs)
chr1 (156-204)||(31202195-31202243)
chr1 (158-202)||(26853117-26853161)
chr1 (160-205)||(460352-460396)
chr1 (153-198)||(6604812-6604857)
chr1 (158-203)||(26852438-26852483)
chr1 (158-203)||(38461065-38461110)
chr1 (158-198)||(36424331-36424371)
chr1 (148-203)||(51661539-51661595)
chr1 (159-191)||(51720740-51720772)
[»] chr7 (1 HSPs)
chr7 (166-203)||(24420068-24420105)


Alignment Details
Target: chr6 (Bit Score: 156; Significance: 7e-83; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 132 - 287
Target Start/End: Original strand, 33771421 - 33771576
Alignment:
Q  132 tagatgacatggctgattatgattgggtgtgttaaaagagtgtgttagtgggtgtgaccctagcatttctctagtttattaggtcacaatcttgagttcc 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33771421 tagatgacatggctgattatgattgggtgtgttaaaagagtgtgttagtgggtgtgaccctagcatttctctagtttattaggtcacaatcttgagttcc 33771520  T
Q  232 actctaactttcctaacttgaaccatcaacaacagatgaagattccaagtaatttg 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33771521 actctaactttcctaacttgaaccatcaacaacagatgaagattccaagtaatttg 33771576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 203
Target Start/End: Original strand, 13852985 - 13853030
Alignment:
Q  158 gtgtgttaaaagagtgtgttagtgggtgtgaccctagcatttctct 203  Q
    |||||||||||||||||||||| | |||||||||||||||||||||    
T  13852985 gtgtgttaaaagagtgtgttagggagtgtgaccctagcatttctct 13853030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 200
Target Start/End: Original strand, 29443760 - 29443826
Alignment:
Q  134 gatgacatggctgattatgattgggtgtgttaaaagagtgtgttagtgggtgtgaccctagcatttc 200  Q
    ||||| ||||||||||||||| || |||| |||||||||||||||   || ||||| ||||||||||    
T  29443760 gatgagatggctgattatgatcggatgtgataaaagagtgtgttaaaaggagtgactctagcatttc 29443826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 43
Target Start/End: Original strand, 33771298 - 33771332
Alignment:
Q  9 gaagaatattgtgagaggataatgcaaagaagatg 43  Q
    |||||| ||||||||||||||||||||||||||||    
T  33771298 gaagaaaattgtgagaggataatgcaaagaagatg 33771332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 198
Target Start/End: Original strand, 7887639 - 7887700
Alignment:
Q  138 acatggctgattatgattgg-gtgtgttaaaagagtgtgttagtgggtgtgaccctagcatt 198  Q
    |||||||| ||| ||||||| |||||||||||| || ||||||  |||||||||||||||||    
T  7887639 acatggcttattttgattggagtgtgttaaaagggtatgttagaaggtgtgaccctagcatt 7887700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 203
Target Start/End: Original strand, 19750147 - 19750204
Alignment:
Q  147 attatgattgg-gtgtgttaaaagagtgtgttagtgggtgtgaccctagcatttctct 203  Q
    ||||||||||| |||||| ||||||||||||||| | |||||||| ||||||| ||||    
T  19750147 attatgattggagtgtgtcaaaagagtgtgttagagagtgtgaccatagcattcctct 19750204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 203
Target Start/End: Original strand, 33464354 - 33464399
Alignment:
Q  158 gtgtgttaaaagagtgtgttagtgggtgtgaccctagcatttctct 203  Q
    |||||||||||| ||||||||| | ||||| |||||||||||||||    
T  33464354 gtgtgttaaaagggtgtgttagagagtgtgtccctagcatttctct 33464399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 169
Target Start/End: Complemental strand, 33770656 - 33770628
Alignment:
Q  141 tggctgattatgattgggtgtgttaaaag 169  Q
    |||||||||||||||||||||||||||||    
T  33770656 tggctgattatgattgggtgtgttaaaag 33770628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 8e-24; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 134 - 202
Target Start/End: Complemental strand, 16499182 - 16499114
Alignment:
Q  134 gatgacatggctgattatgattgggtgtgttaaaagagtgtgttagtgggtgtgaccctagcatttctc 202  Q
    |||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  16499182 gatgacatggctaattatgattggttgtgttaaaagagagtgttagtgggtgtgaccctagcatttctc 16499114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 134 - 199
Target Start/End: Original strand, 27749022 - 27749087
Alignment:
Q  134 gatgacatggctgattatgattgggtgtgttaaaagagtgtgttagtgggtgtgaccctagcattt 199  Q
    |||||||||| | ||||||||||| ||| ||||||||| |||||||||  ||||||||||||||||    
T  27749022 gatgacatggttaattatgattggatgttttaaaagagagtgttagtgaatgtgaccctagcattt 27749087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 202
Target Start/End: Complemental strand, 29337202 - 29337158
Alignment:
Q  158 gtgtgttaaaagagtgtgttagtgggtgtgaccctagcatttctc 202  Q
    |||||||||||||||||||||| | ||||| ||||||||||||||    
T  29337202 gtgtgttaaaagagtgtgttagagagtgtgtccctagcatttctc 29337158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 202
Target Start/End: Complemental strand, 44891767 - 44891723
Alignment:
Q  158 gtgtgttaaaagagtgtgttagtgggtgtgaccctagcatttctc 202  Q
    |||||||||||||||||||||| | ||||| ||||||||||||||    
T  44891767 gtgtgttaaaagagtgtgttagggagtgtgtccctagcatttctc 44891723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 202
Target Start/End: Original strand, 45258070 - 45258114
Alignment:
Q  158 gtgtgttaaaagagtgtgttagtgggtgtgaccctagcatttctc 202  Q
    ||||||||||| |||||| ||| ||||||||||||||||||||||    
T  45258070 gtgtgttaaaaaagtgtgatagagggtgtgaccctagcatttctc 45258114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 202
Target Start/End: Complemental strand, 44057494 - 44057444
Alignment:
Q  153 attgggtgtgttaaaag-agtgtgttagtgggtgtgaccctagcatttctc 202  Q
    ||||||||||||||||| || ||||||| ||||||||||||| ||||||||    
T  44057494 attgggtgtgttaaaaggagagtgttagagggtgtgaccctatcatttctc 44057444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 199
Target Start/End: Original strand, 44892400 - 44892441
Alignment:
Q  158 gtgtgttaaaagagtgtgttagtgggtgtgaccctagcattt 199  Q
    |||||||||||||||||||||| | ||||| |||||||||||    
T  44892400 gtgtgttaaaagagtgtgttagggagtgtgtccctagcattt 44892441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 202
Target Start/End: Complemental strand, 11146336 - 11146292
Alignment:
Q  158 gtgtgttaaaagagtgtgttagtgggtgtgaccctagcatttctc 202  Q
    |||||||||||||||||||||| | |||||  |||||||||||||    
T  11146336 gtgtgttaaaagagtgtgttagggagtgtgttcctagcatttctc 11146292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0421 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0421
Description:

Target: scaffold0421; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 134 - 203
Target Start/End: Original strand, 7262 - 7331
Alignment:
Q  134 gatgacatggctgattatgattgggtgtgttaaaagagtgtgttagtgggtgtgaccctagcatttctct 203  Q
    |||||||||| | ||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  7262 gatgacatggttaattatgaatgggtgtgttaaaagagagtgttagtggatgtgaccctagcatttctct 7331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 8e-18; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 138 - 204
Target Start/End: Original strand, 13545181 - 13545247
Alignment:
Q  138 acatggctgattatgattgggtgtgttaaaagagtgtgttagtgggtgtgaccctagcatttctcta 204  Q
    |||||||| ||||| ||||||||||||||||||| |||| |||||||||||| ||||||||||||||    
T  13545181 acatggctaattattattgggtgtgttaaaagagagtgtaagtgggtgtgactctagcatttctcta 13545247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 138 - 204
Target Start/End: Complemental strand, 13679292 - 13679226
Alignment:
Q  138 acatggctgattatgattgggtgtgttaaaagagtgtgttagtgggtgtgaccctagcatttctcta 204  Q
    |||||||| ||||| ||||||||||||||||||| |||| |||||||||||| ||||||||||||||    
T  13679292 acatggctaattattattgggtgtgttaaaagagagtgtaagtgggtgtgactctagcatttctcta 13679226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 134 - 202
Target Start/End: Original strand, 39220079 - 39220147
Alignment:
Q  134 gatgacatggctgattatgattgggtgtgttaaaagagtgtgttagtgggtgtgaccctagcatttctc 202  Q
    ||||||||||  |||||| ||||| |||||||||||||||||||||| | |||||||||||||||||||    
T  39220079 gatgacatggaggattattattggatgtgttaaaagagtgtgttagttgatgtgaccctagcatttctc 39220147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 153 - 204
Target Start/End: Complemental strand, 13544597 - 13544546
Alignment:
Q  153 attgggtgtgttaaaagagtgtgttagtgggtgtgaccctagcatttctcta 204  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  13544597 attgggtgtgttaaaagagagtgttagtgggtgtgagcctagcatttctcta 13544546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 153 - 204
Target Start/End: Original strand, 13679876 - 13679927
Alignment:
Q  153 attgggtgtgttaaaagagtgtgttagtgggtgtgaccctagcatttctcta 204  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  13679876 attgggtgtgttaaaagagagtgttagtgggtgtgagcctagcatttctcta 13679927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 134 - 199
Target Start/End: Complemental strand, 21120146 - 21120081
Alignment:
Q  134 gatgacatggctgattatgattgggtgtgttaaaagagtgtgttagtgggtgtgaccctagcattt 199  Q
    |||||||||| | |||||||||||||||||| ||| || ||||||||||||||||||||| |||||    
T  21120146 gatgacatggttaattatgattgggtgtgttgaaaaagagtgttagtgggtgtgaccctaccattt 21120081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 134 - 198
Target Start/End: Complemental strand, 3528082 - 3528017
Alignment:
Q  134 gatgacatggctgattatgattgg-gtgtgttaaaagagtgtgttagtgggtgtgaccctagcatt 198  Q
    |||||||||||| ||||| ||||| |||||| ||||||||||||||| | ||||| ||||||||||    
T  3528082 gatgacatggcttattattattggagtgtgtcaaaagagtgtgttagggagtgtgtccctagcatt 3528017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 204
Target Start/End: Complemental strand, 27709369 - 27709324
Alignment:
Q  159 tgtgttaaaagagtgtgttagtgggtgtgaccctagcatttctcta 204  Q
    ||||||| | ||||||||||| ||||||||||||||||||||||||    
T  27709369 tgtgttagaggagtgtgttagagggtgtgaccctagcatttctcta 27709324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 193
Target Start/End: Original strand, 37355027 - 37355082
Alignment:
Q  138 acatggctgattatgattgggtgtgttaaaagagtgtgttagtgggtgtgacccta 193  Q
    ||||| || ||| ||||| ||||||||||||||| |||||||||| ||||||||||    
T  37355027 acatgtctaattttgatttggtgtgttaaaagagagtgttagtggatgtgacccta 37355082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 202
Target Start/End: Complemental strand, 30248780 - 30248710
Alignment:
Q  132 tagatgacatggctgattatgattgggtgtgttaaaagagtgtgttagtgggtgtgaccctagcatttctc 202  Q
    |||||||||||||| | ||| ||| || |||||||| |  ||| ||||||| |||||||||||||||||||    
T  30248780 tagatgacatggctaactattattcggcgtgttaaacggatgtattagtggatgtgaccctagcatttctc 30248710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 202
Target Start/End: Original strand, 27710058 - 27710091
Alignment:
Q  169 gagtgtgttagtgggtgtgaccctagcatttctc 202  Q
    ||||||||||| ||||||||||||||||||||||    
T  27710058 gagtgtgttagagggtgtgaccctagcatttctc 27710091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 205
Target Start/End: Complemental strand, 37354228 - 37354183
Alignment:
Q  160 gtgttaaaagagtgtgttagtgggtgtgaccctagcatttctctag 205  Q
    |||||| ||||| ||||||||| |||||||| ||||||||||||||    
T  37354228 gtgttagaagagagtgttagtgagtgtgaccttagcatttctctag 37354183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 204
Target Start/End: Complemental strand, 39217641 - 39217596
Alignment:
Q  159 tgtgttaaaagagtgtgttagtgggtgtgaccctagcatttctcta 204  Q
    |||||||||| ||| ||| ||||| |||||||||||||||||||||    
T  39217641 tgtgttaaaatagtatgtcagtggatgtgaccctagcatttctcta 39217596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 8e-18; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 146 - 204
Target Start/End: Complemental strand, 49976941 - 49976883
Alignment:
Q  146 gattatgattgggtgtgttaaaagagtgtgttagtgggtgtgaccctagcatttctcta 204  Q
    |||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  49976941 gattattattgagtgtgttaaaagagtgtgttagtgggtgtgacactagcatttctcta 49976883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 157 - 204
Target Start/End: Complemental strand, 32998979 - 32998932
Alignment:
Q  157 ggtgtgttaaaagagtgtgttagtgggtgtgaccctagcatttctcta 204  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  32998979 ggtgtgttaaaagagagtgctagtgggtgtgaccctagcatttctcta 32998932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 138 - 203
Target Start/End: Complemental strand, 11884964 - 11884899
Alignment:
Q  138 acatggctgattatgattgggtgtgttaaaagagtgtgttagtgggtgtgaccctagcatttctct 203  Q
    ||||| |||||| | |||||| ||||||||| || ||||||||||||||||||||| | |||||||    
T  11884964 acatgactgatttttattgggcgtgttaaaatagagtgttagtgggtgtgaccctaacttttctct 11884899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 203
Target Start/End: Original strand, 37628444 - 37628489
Alignment:
Q  158 gtgtgttaaaagagtgtgttagtgggtgtgaccctagcatttctct 203  Q
    |||||||||||||||||||||| | ||||| |||||||||||||||    
T  37628444 gtgtgttaaaagagtgtgttagggagtgtgtccctagcatttctct 37628489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 201
Target Start/End: Complemental strand, 43276442 - 43276381
Alignment:
Q  141 tggctgattatgattgg-gtgtgttaaaagagtgtgttagtgggtgtgaccctagcatttct 201  Q
    ||||||| ||||| ||| |||||||||||||||||||||| | ||||| |||||||||||||    
T  43276442 tggctgaatatgagtggagtgtgttaaaagagtgtgttagggagtgtgtccctagcatttct 43276381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 201
Target Start/End: Complemental strand, 49283659 - 49283611
Alignment:
Q  153 attgggtgtgttaaaagagtgtgttagtgggtgtgaccctagcatttct 201  Q
    ||||||||||||||||||| |||||||||  |||||||||| |||||||    
T  49283659 attgggtgtgttaaaagagagtgttagtgaatgtgaccctaacatttct 49283611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 203
Target Start/End: Complemental strand, 912772 - 912702
Alignment:
Q  134 gatgacatggctgattatgattgg-gtgtgttaaaagagtgtgttagtgggtgtgaccctagcatttctct 203  Q
    |||||||||||| ||||| ||||| |||||| ||||||||||||||| | || || |||||||||| ||||    
T  912772 gatgacatggcttattattattggagtgtgtcaaaagagtgtgttagggagtatgtccctagcattcctct 912702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 202
Target Start/End: Complemental strand, 48676878 - 48676828
Alignment:
Q  152 gattgggtgtgttaaaagagtgtgttagtgggtgtgaccctagcatttctc 202  Q
    ||||| ||||||||||||||  ||||||||| |||||||||| ||||||||    
T  48676878 gattgagtgtgttaaaagagaatgttagtggatgtgaccctaacatttctc 48676828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 202
Target Start/End: Complemental strand, 30626508 - 30626472
Alignment:
Q  166 aaagagtgtgttagtgggtgtgaccctagcatttctc 202  Q
    |||||||||||||| | ||||||||||||||||||||    
T  30626508 aaagagtgtgttagggagtgtgaccctagcatttctc 30626472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 153 - 204
Target Start/End: Complemental strand, 25331965 - 25331914
Alignment:
Q  153 attgggtgtgttaaaagagtgtgttagtgggtgtgaccctagcatttctcta 204  Q
    |||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  25331965 attgggtgtgctaaaagagagtgttagtgggtgtgaccctagcatttctcta 25331914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 153 - 203
Target Start/End: Complemental strand, 10343906 - 10343856
Alignment:
Q  153 attgggtgtgttaaaagagtgtgttagtgggtgtgaccctagcatttctct 203  Q
    |||| |||||||||||||||||| ||||||||||| |||||||||||||||    
T  10343906 attgagtgtgttaaaagagtgtgctagtgggtgtgtccctagcatttctct 10343856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 203
Target Start/End: Original strand, 16497719 - 16497764
Alignment:
Q  158 gtgtgttaaaagagtgtgttagtgggtgtgaccctagcatttctct 203  Q
    ||||||||||||||||||||||  |||||||| |||||||||||||    
T  16497719 gtgtgttaaaagagtgtgttagatggtgtgactctagcatttctct 16497764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 138 - 203
Target Start/End: Original strand, 39384848 - 39384912
Alignment:
Q  138 acatggctgattatgattgggtgtgttaaaagagtgtgttagtgggtgtgaccctagcatttctct 203  Q
    |||| ||||||| | ||| ||||||||||||||| |||||||||||| ||||||||| ||||||||    
T  39384848 acattgctgatttttattaggtgtgttaaaagagagtgttagtgggtatgaccctag-atttctct 39384912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 202
Target Start/End: Original strand, 11590786 - 11590842
Alignment:
Q  147 attatgattgg-gtgtgttaaaagagtgtgttagtgggtgtgaccctagcatttctc 202  Q
    ||||||||||| |||||| ||||||||||||||| | |||||||| |||||||||||    
T  11590786 attatgattggagtgtgtcaaaagagtgtgttagagagtgtgaccatagcatttctc 11590842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 202
Target Start/End: Original strand, 25332404 - 25332448
Alignment:
Q  158 gtgtgttaaaagagtgtgttagtgggtgtgaccctagcatttctc 202  Q
    |||||||||||||| ||||| |||||||||| |||||||||||||    
T  25332404 gtgtgttaaaagagagtgttcgtgggtgtgatcctagcatttctc 25332448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 202
Target Start/End: Complemental strand, 17768457 - 17768412
Alignment:
Q  157 ggtgtgttaaaagagtgtgttagtgggtgtgaccctagcatttctc 202  Q
    ||||||||||||||| |||||||||| ||| ||||||| |||||||    
T  17768457 ggtgtgttaaaagagagtgttagtggatgtcaccctagtatttctc 17768412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 203
Target Start/End: Complemental strand, 45627854 - 45627809
Alignment:
Q  158 gtgtgttaaaagagtgtgttagtgggtgtgaccctagcatttctct 203  Q
    |||||||||||||||||||||| | || || |||||||||||||||    
T  45627854 gtgtgttaaaagagtgtgttagggagtttgtccctagcatttctct 45627809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 202
Target Start/End: Complemental strand, 11590184 - 11590148
Alignment:
Q  166 aaagagtgtgttagtgggtgtgaccctagcatttctc 202  Q
    |||||||||||||| |||| |||||||||||||||||    
T  11590184 aaagagtgtgttagagggtttgaccctagcatttctc 11590148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 198
Target Start/End: Complemental strand, 44553289 - 44553237
Alignment:
Q  147 attatgattgg-gtgtgttaaaagagtgtgttagtgggtgtgaccctagcatt 198  Q
    ||||||||||| |||||| ||||||||||||||| | |||||||| |||||||    
T  44553289 attatgattggagtgtgtcaaaagagtgtgttagagagtgtgaccatagcatt 44553237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 138 - 203
Target Start/End: Original strand, 20600 - 20665
Alignment:
Q  138 acatggctgattatgattgggtgtgttaaaagagtgtgttagtgggtgtgaccctagcatttctct 203  Q
    ||||| |||||| | ||||||||||||||||||| ||||||||||||| ||||||||| |||||||    
T  20600 acatgactgatttttattgggtgtgttaaaagagagtgttagtgggtgggaccctagcttttctct 20665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 4)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 138 - 199
Target Start/End: Complemental strand, 10605 - 10544
Alignment:
Q  138 acatggctgattatgattgggtgtgttaaaagagtgtgttagtgggtgtgaccctagcattt 199  Q
    |||||||| ||| | ||||||||||||||||||| ||||||||| |||||||||||||||||    
T  10605 acatggctaatttttattgggtgtgttaaaagagagtgttagtgagtgtgaccctagcattt 10544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 138 - 199
Target Start/End: Complemental strand, 20933 - 20872
Alignment:
Q  138 acatggctgattatgattgggtgtgttaaaagagtgtgttagtgggtgtgaccctagcattt 199  Q
    |||||||| ||| | ||||||||||||||||||| ||||||||| |||||||||||||||||    
T  20933 acatggctaatttttattgggtgtgttaaaagagagtgttagtgagtgtgaccctagcattt 20872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 199
Target Start/End: Original strand, 11001 - 11047
Alignment:
Q  153 attgggtgtgttaaaagagtgtgttagtgggtgtgaccctagcattt 199  Q
    ||||| ||||||||||||| |||||||||||||||||| ||||||||    
T  11001 attggatgtgttaaaagagagtgttagtgggtgtgaccatagcattt 11047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 199
Target Start/End: Original strand, 21329 - 21375
Alignment:
Q  153 attgggtgtgttaaaagagtgtgttagtgggtgtgaccctagcattt 199  Q
    ||||| ||||||||||||| |||||||||||||||||| ||||||||    
T  21329 attggatgtgttaaaagagagtgttagtgggtgtgaccatagcattt 21375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 153 - 199
Target Start/End: Original strand, 40601412 - 40601458
Alignment:
Q  153 attgggtgtgttaaaagagtgtgttagtgggtgtgaccctagcattt 199  Q
    ||||||||||||||||||| ||||||||||||||||||||| |||||    
T  40601412 attgggtgtgttaaaagagagtgttagtgggtgtgaccctaacattt 40601458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 151 - 203
Target Start/End: Original strand, 41696959 - 41697011
Alignment:
Q  151 tgattgggtgtgttaaaagagtgtgttagtgggtgtgaccctagcatttctct 203  Q
    ||||| ||||||||| ||||| ||||||||||||||| |||||||||||||||    
T  41696959 tgatttggtgtgttagaagagagtgttagtgggtgtggccctagcatttctct 41697011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 204
Target Start/End: Original strand, 2168084 - 2168130
Alignment:
Q  158 gtgtgttaaaagagtgtgttagtgggtgtgaccctagcatttctcta 204  Q
    |||||||||||||||||||||| |||||||| | |||||||||||||    
T  2168084 gtgtgttaaaagagtgtgttagagggtgtgatcatagcatttctcta 2168130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 138 - 199
Target Start/End: Complemental strand, 40600793 - 40600732
Alignment:
Q  138 acatggctgattatgattgggtgtgttaaaagagtgtgttagtgggtgtgaccctagcattt 199  Q
    |||||||| ||| | ||||| ||||||||||||| |||||||||||||||| ||||| ||||    
T  40600793 acatggctaatttttattggatgtgttaaaagagagtgttagtgggtgtgatcctagtattt 40600732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 30085839 - 30085799
Alignment:
Q  163 ttaaaagagtgtgttagtgggtgtgaccctagcatttctct 203  Q
    |||||||||||||||||| |||||||||||| |||||||||    
T  30085839 ttaaaagagtgtgttagtaggtgtgaccctatcatttctct 30085799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 202
Target Start/End: Original strand, 43514495 - 43514539
Alignment:
Q  158 gtgtgttaaaagagtgtgttagtgggtgtgaccctagcatttctc 202  Q
    |||||||||||||||||||||| | ||||| ||||||||||||||    
T  43514495 gtgtgttaaaagagtgtgttagggagtgtgtccctagcatttctc 43514539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 151 - 202
Target Start/End: Complemental strand, 41696122 - 41696071
Alignment:
Q  151 tgattgggtgtgttaaaagagtgtgttagtgggtgtgaccctagcatttctc 202  Q
    ||||| ||||||||||||||| |||||||||| || || |||||||||||||    
T  41696122 tgatttggtgtgttaaaagagagtgttagtggctgcgatcctagcatttctc 41696071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 204
Target Start/End: Complemental strand, 43513862 - 43513816
Alignment:
Q  158 gtgtgttaaaagagtgtgttagtgggtgtgaccctagcatttctcta 204  Q
    |||||||||||||||||||||| | ||||| ||||||||||| ||||    
T  43513862 gtgtgttaaaagagtgtgttagggagtgtgtccctagcatttatcta 43513816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 31202243 - 31202195
Alignment:
Q  156 gggtgtgttaaaagagtgtgttagtgggtgtgaccctagcatttctcta 204  Q
    |||||||||| | ||||||||||| ||||||||||||||||||||||||    
T  31202243 gggtgtgttagaggagtgtgttagagggtgtgaccctagcatttctcta 31202195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 202
Target Start/End: Original strand, 26853117 - 26853161
Alignment:
Q  158 gtgtgttaaaagagtgtgttagtgggtgtgaccctagcatttctc 202  Q
    |||||||||||||||||||||| | ||||| ||||||||||||||    
T  26853117 gtgtgttaaaagagtgtgttagggagtgtgtccctagcatttctc 26853161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 205
Target Start/End: Original strand, 460352 - 460396
Alignment:
Q  160 gtgttaaaagagtgtgttagtgggtgtgaccctagcatttctctag 205  Q
    ||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  460352 gtgttaaaagaatgtgttagtaggtgtga-cctagcatttctctag 460396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 198
Target Start/End: Original strand, 6604812 - 6604857
Alignment:
Q  153 attgggtgtgttaaaagagtgtgttagtgggtgtgaccctagcatt 198  Q
    |||||||||||| |||||||||||||| ||||||| || |||||||    
T  6604812 attgggtgtgtttaaagagtgtgttagagggtgtgtccttagcatt 6604857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 203
Target Start/End: Complemental strand, 26852483 - 26852438
Alignment:
Q  158 gtgtgttaaaagagtgtgttagtgggtgtgaccctagcatttctct 203  Q
    |||||||||||||||||||||| | ||||  |||||||||||||||    
T  26852483 gtgtgttaaaagagtgtgttagggagtgtatccctagcatttctct 26852438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 203
Target Start/End: Original strand, 38461065 - 38461110
Alignment:
Q  158 gtgtgttaaaagagtgtgttagtgggtgtgaccctagcatttctct 203  Q
    |||||| ||||||||||||||| | ||||| |||||||||||||||    
T  38461065 gtgtgtcaaaagagtgtgttagggagtgtgtccctagcatttctct 38461110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 198
Target Start/End: Complemental strand, 36424371 - 36424331
Alignment:
Q  158 gtgtgttaaaagagtgtgttagtgggtgtgaccctagcatt 198  Q
    ||||||| |||||| ||||||| ||||||||||||||||||    
T  36424371 gtgtgtttaaagagagtgttagagggtgtgaccctagcatt 36424331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 203
Target Start/End: Complemental strand, 51661595 - 51661539
Alignment:
Q  148 ttatgattgg-gtgtgttaaaagagtgtgttagtgggtgtgaccctagcatttctct 203  Q
    |||||||||| |||||||| | ||| ||||||| |||||||||||||||||| ||||    
T  51661595 ttatgattggagtgtgttataggagagtgttagagggtgtgaccctagcattcctct 51661539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 191
Target Start/End: Original strand, 51720740 - 51720772
Alignment:
Q  159 tgtgttaaaagagtgtgttagtgggtgtgaccc 191  Q
    ||||||||||||| |||||||||||||||||||    
T  51720740 tgtgttaaaagagagtgttagtgggtgtgaccc 51720772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 203
Target Start/End: Complemental strand, 24420105 - 24420068
Alignment:
Q  166 aaagagtgtgttagtgggtgtgaccctagcatttctct 203  Q
    |||||||||||||| |||||||||||||||||| ||||    
T  24420105 aaagagtgtgttagagggtgtgaccctagcattcctct 24420068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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