View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1396_low_27 (Length: 309)
Name: NF1396_low_27
Description: NF1396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1396_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 8 - 280
Target Start/End: Complemental strand, 9601658 - 9601386
Alignment:
| Q |
8 |
tgagatgaaggaaaaaacacagtgcacaaaaacaaactgcagaaggttaannnnnnnacaaagcaaaggattaaaatttggaaaatgaagaaatcaaaaa |
107 |
Q |
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| T |
9601658 |
tgagatgaaggaaaaaacacagtgcacaaaaacaaactgcagaaggttaaattttttacaaagcaaaggattaaaatttggaaaatgaagaaatcaaaaa |
9601559 |
T |
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| Q |
108 |
tcaattttcttaagatttttattatctataattttcttaagatatcacgttcatgcacactggaaacaaaagtaaaggcttcaatggtggcggtgctagg |
207 |
Q |
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| |||||||||||||||||||||| || |||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||||| |||||||||| |
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| T |
9601558 |
ttaattttcttaagatttttattacctgcaattttcttaagatatcatgttcatgcacactagaaacaaaagcaaaggcttcaatggtgtcggtgctagg |
9601459 |
T |
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| Q |
208 |
tttcttttacaattctctaggtgcttgttggatagaaatgagttccatggatgcggagaaaatggttcggtat |
280 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
9601458 |
tttcttttacaattctctaggtgcttgttggatggaaatgagttccatggatgcggagaaaatggttcggtat |
9601386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 8 - 280
Target Start/End: Complemental strand, 21245254 - 21244982
Alignment:
| Q |
8 |
tgagatgaaggaaaaaacacagtgcacaaaaacaaactgcagaaggttaannnnnnnacaaagcaaaggattaaaatttggaaaatgaagaaatcaaaaa |
107 |
Q |
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| T |
21245254 |
tgagatgaaggaaaaaacacagtgcacaaaaacaaactgcagaaggttaaattttttacaaagcaaaggattaaaatttggaaaatgaagaaatcaaaaa |
21245155 |
T |
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| Q |
108 |
tcaattttcttaagatttttattatctataattttcttaagatatcacgttcatgcacactggaaacaaaagtaaaggcttcaatggtggcggtgctagg |
207 |
Q |
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| T |
21245154 |
ttaattttcttaagatttttattacctgcaattttcttaagatatcatgttcatgcacactagaaacaaaagcaaaggcttcaatggtgacggtgctagg |
21245055 |
T |
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| Q |
208 |
tttcttttacaattctctaggtgcttgttggatagaaatgagttccatggatgcggagaaaatggttcggtat |
280 |
Q |
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| T |
21245054 |
tttcttttacaattctctaggtgcttgttggatggaaatgagttccatggatgcggagaaaatggttcggtat |
21244982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 8 - 280
Target Start/End: Original strand, 24753570 - 24753842
Alignment:
| Q |
8 |
tgagatgaaggaaaaaacacagtgcacaaaaacaaactgcagaaggttaannnnnnnacaaagcaaaggattaaaatttggaaaatgaagaaatcaaaaa |
107 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24753570 |
tgagatgaaggaaaaaacacaatgcacaaaaacaaactgcagaaggttcaattttttacaaagcaaaggattaaaatttggaaaatgaagaaatcaaaaa |
24753669 |
T |
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| Q |
108 |
tcaattttcttaagatttttattatctataattttcttaagatatcacgttcatgcacactggaaacaaaagtaaaggcttcaatggtggcggtgctagg |
207 |
Q |
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| |||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
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| T |
24753670 |
ttaattttcttaaggtttttattatctgcaattttcttaagatatcatgttcatgcacactggaaacaaaagcaaaggcttcaatggtggcggtgccagg |
24753769 |
T |
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| Q |
208 |
tttcttttacaattctctaggtgcttgttggatagaaatgagttccatggatgcggagaaaatggttcggtat |
280 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
24753770 |
tttcttttacaattctctaggtgcttgttggatggaaatgagttccatggatgcggagaaaatggttcggtat |
24753842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 8 - 280
Target Start/End: Complemental strand, 39906016 - 39905744
Alignment:
| Q |
8 |
tgagatgaaggaaaaaacacagtgcacaaaaacaaactgcagaaggttaannnnnnn-acaaagcaaaggattaaaatttggaaaatgaagaaatcaaaa |
106 |
Q |
| |
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||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
39906016 |
tgagatgaaggaaaaaatacagtgcacaaaaacaa-ctgcagaaggttaaatttttttacaaagcaaaggattaaaatttggaaaatgaagaaatcaaaa |
39905918 |
T |
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| Q |
107 |
atcaattttcttaagatttttattatctataattttcttaagatatcacgttcatgcacactggaaacaaaagtaaaggcttcaatggtggcggtgctag |
206 |
Q |
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|| ||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||| |
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| T |
39905917 |
attaattttcttaagatttttattatttgcaattttcttaagatatcatgttcatgcacactagaaacaaaagcaaaggcttcaatggtggcggtgctag |
39905818 |
T |
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| Q |
207 |
gtttcttttacaattctctaggtgcttgttggatagaaatgagttccatggatgcggagaaaatggttcggtat |
280 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
39905817 |
gtttcttttacaattctctaggtgcttgttggatggaaatgagttccatggatgcggagaaaatggttcggtat |
39905744 |
T |
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