View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1396_low_28 (Length: 307)
Name: NF1396_low_28
Description: NF1396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1396_low_28 |
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| [»] chr6 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 33 - 307
Target Start/End: Complemental strand, 4652991 - 4652729
Alignment:
| Q |
33 |
aaaaggtaggtttgttaataaaaatgggataatgcataggagagatttgttttgtcaccatggaggattttttgatnnnnnnnnnnnnttatgatccgtc |
132 |
Q |
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| T |
4652991 |
aaaaggtaggtttgttaataaaaatgggataatgcataggagagatttgttttgtcaccgtggaggattttctgataaaaaaaa----tcatgatccgtc |
4652896 |
T |
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| Q |
133 |
taaagaacaacgaaatagacaatcttggagatgtggatgcaaggcaagcatgacaatcaaattgaagaaatcctttgagatttttccagaagagtggcag |
232 |
Q |
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| T |
4652895 |
taaagaacaacgaaatagacaatcttgga--------tgcaaggcaagcatgacaatcaaattgaagaaatcctttgagatttttccagaagagtggcag |
4652804 |
T |
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| Q |
233 |
gttattgaatttatatccagccacaatcataatttactaccttcagatcaagtgcacttccttgcatcttaccgc |
307 |
Q |
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| T |
4652803 |
gatattgaatttatatccagccacaatcataatttactaccttcagatcaagtgcacttccttgcatcttaccgc |
4652729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 30 - 307
Target Start/End: Original strand, 23301909 - 23302182
Alignment:
| Q |
30 |
taaaaaaggtaggtttgttaataaaaatgggataatgcataggagagatttgttttgtcaccatggaggattttttgatnnnnnnnnnnnnttatgatcc |
129 |
Q |
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| T |
23301909 |
taaaaaaggtaggtttgttaataaaaatgggataatgcaaaggagagatttgttttgtcaccgaggaggatttcctgataaaaaaat----tcaagatcc |
23302004 |
T |
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| Q |
130 |
gtctaaagaacaacgaaatagacaatcttggagatgtggatgcaaggcaagcatgacaatcaaattgaagaaatcctttgagatttttccagaagagtgg |
229 |
Q |
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| T |
23302005 |
gtctaaagaacaacgaaatagaccatcttcgagatgtggatgcaaggcaagcatgacaatcaaattgaagaaatccttagagatttttccagaagagtgg |
23302104 |
T |
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| Q |
230 |
caggttattgaatttatatccagccacaatcataatttactaccttcagatcaagtgcacttccttgcatcttaccgc |
307 |
Q |
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| T |
23302105 |
caggttattgaatttatatctaaccacaatcatgatttactaccttcagatcaagtgcacttccttgcatcttaccgc |
23302182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 178; Significance: 5e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 33 - 307
Target Start/End: Complemental strand, 16150399 - 16150129
Alignment:
| Q |
33 |
aaaaggtaggtttgttaataaaaatgggataatgcataggagagatttgttttgtcaccatggaggattttttgatnnnnnnnnnnnnttatgatccgtc |
132 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||| | | |||||||| |
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| T |
16150399 |
aaaaggtaggtttgttaataaaaatgggataatgcacaggagagatttgttttgtcaccgcggaggatttcctgataaaaaaat----tcaagatccgtc |
16150304 |
T |
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| Q |
133 |
taaagaacaacgaaatagacaatcttggagatgtggatgcaaggcaagcatgacaatcaaattgaagaaatcctttgagatttttccagaagagtggcag |
232 |
Q |
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| T |
16150303 |
taaagaacaacgaaatagaccatcttcgagatgtggatgcaaggcaagcatgacaatcaaattgaagaaatccttcgagatttttccagaagagtggcag |
16150204 |
T |
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| Q |
233 |
gttattgaatttatatccagccacaatcataatttactaccttcagatcaagtgcacttccttgcatcttaccgc |
307 |
Q |
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||| ||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16150203 |
gtttttgaatttatatctaaccacaatcatgatttactaccttcagatcaagtgcacttccttgcatcttaccgc |
16150129 |
T |
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