View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1396_low_31 (Length: 297)
Name: NF1396_low_31
Description: NF1396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1396_low_31 |
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| [»] scaffold1696 (1 HSPs) |
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| [»] scaffold1585 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 20 - 237
Target Start/End: Original strand, 22099760 - 22099986
Alignment:
| Q |
20 |
gagcagcaccacagaccattaaagctgatatcattgcaaacaaaaccaaacaccatcttaaccatgatgatgatgatgaatcagatcttcctcttgacat |
119 |
Q |
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|||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22099760 |
gagcaggaccacacaccattaaagctgatatcattgcaaacaaaaccaaacaccatcttaaccatgatgatgatgatgaatcagatcttcctcttgacat |
22099859 |
T |
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| Q |
120 |
tctttctttatcagatctaattcttcttctatcttctcaattc------------agaaagaaagaagctggttggttatatggtgttctttgccgattt |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
22099860 |
tctttctttatcagatctaattcttcttctatcttctcaattcagaaagaaacaaagaaagaaagaagctggttggttatatggtg---tttgccgattt |
22099956 |
T |
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| Q |
208 |
gatttgaacaagtcctagtaacagtgttgt |
237 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
22099957 |
gatttgaacaagtcctagtaacagtgttgt |
22099986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 119; Significance: 8e-61; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 20 - 237
Target Start/End: Original strand, 38161511 - 38161731
Alignment:
| Q |
20 |
gagcagcaccacagaccattaaagctgatatcattgcaaacaaaaccaaacaccatcttaaccatgatgatgatgatgaatcagatcttcctcttgacat |
119 |
Q |
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|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
38161511 |
gagcaggaccacacaccattaaagctgatatcattgcaaacaaaaccaaacaccatcttaaccatga---tgatgatgaatcagatctccctcttgacat |
38161607 |
T |
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| Q |
120 |
tctttctttatcagatctaattcttcttctatcttctcaattcagaaagaaa---------gaagctggttggttatatggtgttctttgccgatttgat |
210 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||| | |||||||| |||| |||||||||||||| |
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| T |
38161608 |
tctttctttatcagatctaattcttcttctattttctcaattcagaaacaaacaaacaaacaaagagtgctggttata---tgttgtttgccgatttgat |
38161704 |
T |
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| Q |
211 |
ttgaacaagtcctagtaacagtgttgt |
237 |
Q |
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||||||||||| ||||||||||||||| |
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| T |
38161705 |
ttgaacaagtcgtagtaacagtgttgt |
38161731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1696 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: scaffold1696
Description:
Target: scaffold1696; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 27 - 233
Target Start/End: Complemental strand, 1417 - 1213
Alignment:
| Q |
27 |
accacagaccattaaagctgatatcattgcaaacaaaaccaaacaccatcttaaccatgatgatgatgatgaatcagatcttcctcttgacattctttct |
126 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||| |||||| |
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| T |
1417 |
accacacaccattaaagctgatatcattgcaaacaaaaccaaactccatcttaaccatgatgatgatga---atcagatctccctcttgacatactttct |
1321 |
T |
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| Q |
127 |
ttatcagatctaattcttcttctatcttctcaattc----agaaagaaagaagctggttggttatatggtgttctttgccgatttgatttgaacaagtcc |
222 |
Q |
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||||||||||||||||||||||||| |||||||||| | ||| |||||| || |||||||| |||| |||||||||||||||||||| |||| |
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| T |
1320 |
ttatcagatctaattcttcttctattttctcaattcataaacaaacaaagaaagaggctggttata---tgttgtttgccgatttgatttgaacgagtcg |
1224 |
T |
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| Q |
223 |
tagtaacagtg |
233 |
Q |
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||||||||||| |
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| T |
1223 |
tagtaacagtg |
1213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1585 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: scaffold1585
Description:
Target: scaffold1585; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 27 - 237
Target Start/End: Original strand, 1137 - 1345
Alignment:
| Q |
27 |
accacagaccattaaagctgatatcattgcaaacaaaaccaaacaccatcttaaccatgatgatgatgatgaatcagatcttcctcttgacattctttct |
126 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||| |||||| |
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| T |
1137 |
accacacaccattaaagctgatatcattgcaaacaaaaccaaactccatcttaaccatga---tgatgatgaatcagatctccctcttgacatactttct |
1233 |
T |
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| Q |
127 |
ttatcagatctaattcttcttctatcttctcaattc----agaaagaaagaagctggttggttatatggtgttctttgccgatttgatttgaacaagtcc |
222 |
Q |
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|||||| |||||||||||||||||| |||||||||| | ||| |||||| || |||||||| |||| |||||||||||||||||||| ||| |
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| T |
1234 |
ttatcaaatctaattcttcttctattttctcaattcataaacaaacaaagaaagaggctggttata---tgttgtttgccgatttgatttgaacgagttg |
1330 |
T |
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| Q |
223 |
tagtaacagtgttgt |
237 |
Q |
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||||||||||||||| |
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| T |
1331 |
tagtaacagtgttgt |
1345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 7e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 28 - 174
Target Start/End: Complemental strand, 44220366 - 44220222
Alignment:
| Q |
28 |
ccacagaccattaaagctgatatcattgcaaacaaaaccaaacaccatcttaaccatgatgatg-atgatgaatcagatcttcctcttgacattctttct |
126 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||| |||||||||||| ||||| |
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| T |
44220366 |
ccacacaccattaaagccgatatcattgcaaacaaaaccaaacaccatcttaaccatgatgatgaacgaagaatcagatctccctcttgacattttttct |
44220267 |
T |
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| Q |
127 |
ttatcagatctaattcttcttctatcttctcaattcagaaagaaagaa |
174 |
Q |
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||||||||||||| ||||||||||||||||||||| ||| |||||| |
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| T |
44220266 |
ttatcagatctaa---ttcttctatcttctcaattcacaaacaaagaa |
44220222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 27 - 174
Target Start/End: Original strand, 18296710 - 18296855
Alignment:
| Q |
27 |
accacagaccattaaagctgatatcattgcaaacaaaaccaaacaccatcttaaccatgatgatga-tgatgaatcagatcttcctcttgacattctttc |
125 |
Q |
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|||||| ||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||| |||| |
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| T |
18296710 |
accacacaccattaaagccgatatcatcgcaaataaaaccaaacaccatcttaaccatgatgatgaccgaagaatcagatctccctcttgacattttttc |
18296809 |
T |
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| Q |
126 |
tttatcagatctaattcttcttctatcttctcaattcagaaagaaagaa |
174 |
Q |
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|||||||||||||| ||||||||||||||||||||| ||| |||||| |
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| T |
18296810 |
tttatcagatctaa---ttcttctatcttctcaattcacaaacaaagaa |
18296855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 198 - 237
Target Start/End: Original strand, 18296888 - 18296927
Alignment:
| Q |
198 |
ttgccgatttgatttgaacaagtcctagtaacagtgttgt |
237 |
Q |
| |
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||||||||||||||| |||||||| ||||||||||||||| |
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| T |
18296888 |
ttgccgatttgattttaacaagtcgtagtaacagtgttgt |
18296927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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