View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1396_low_34 (Length: 286)
Name: NF1396_low_34
Description: NF1396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1396_low_34 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 16 - 257
Target Start/End: Original strand, 14133529 - 14133770
Alignment:
| Q |
16 |
atggttccgtggaaatgaaacatagacacatagttgaaacaggcttgaccttgttagatcattctaaggtgcccttatgtttctaggattacgccttctt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14133529 |
atggttccgtggaaatgaaacatagacacatagttgaaacaggcttgaccttgttagatcattctaaggtgcccttatgtttctaggattacgccttctt |
14133628 |
T |
|
| Q |
116 |
aacagccacctatctcattaacagattgttatctcatactcttggtaacaagtcaccatttttcatgcttcaccttcacattcctgagtacaagttttta |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14133629 |
aacagccacctatctcattaacagattgttatctcatactcttggtaacaagtcaccatttttcatgcttcaccttcacattcctgagtacaagttttta |
14133728 |
T |
|
| Q |
216 |
aagagttttggctttgtttgtttcccttttaccaaaccatac |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14133729 |
aagagttttggctttgtttgtttcccttttaccaaaccatac |
14133770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University