View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1396_low_35 (Length: 286)
Name: NF1396_low_35
Description: NF1396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1396_low_35 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 29062162 - 29061906
Alignment:
| Q |
1 |
attatcattgtcttcgtaaaataacatcttcttaaacaacactttcaaaaatttccaggcttaagaaaatatgaatcaagtaaccaacgtgttaaaaatt |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29062162 |
attatcattgtcttcgtaaaataatatcttcttaaacaacactttcaaaaatttacaggcttaagaaaatatgaatcaagtaaccaacgtgttaaaaatt |
29062063 |
T |
|
| Q |
101 |
caaagtttctaatatcacaaaattactggaaatcgtagcaaagaagattgtctgcatatgtgtaattcatgataactttttcctacacaaagacaaatta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29062062 |
caaagtttctaatatcacaaaattactggaaatcgtagcaaagaagattgtctgcatatgtgtaattcatgataactttttcctacacaaagacaaatta |
29061963 |
T |
|
| Q |
201 |
aagtgtctgaatttgttactggtcaataagatcctttcacttatgagacatctatgt |
257 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29061962 |
aaatgtctgaatttgttactggtcaataagatcctttcacttatgagacatctatgt |
29061906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University