View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1396_low_38 (Length: 266)

Name: NF1396_low_38
Description: NF1396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1396_low_38
NF1396_low_38
[»] chr2 (8 HSPs)
chr2 (1-259)||(16656396-16656655)
chr2 (5-118)||(43626371-43626484)
chr2 (1-130)||(12235845-12235974)
chr2 (1-130)||(12244329-12244458)
chr2 (1-130)||(14705510-14705639)
chr2 (1-49)||(7543324-7543372)
chr2 (1-118)||(16661004-16661121)
chr2 (1-52)||(12257918-12257969)
[»] chr1 (3 HSPs)
chr1 (1-132)||(4677464-4677595)
chr1 (5-115)||(15596110-15596220)
chr1 (1-131)||(34465173-34465303)
[»] chr7 (22 HSPs)
chr7 (1-130)||(1302358-1302487)
chr7 (1-130)||(8647748-8647877)
chr7 (1-130)||(8668512-8668641)
chr7 (1-130)||(7876760-7876889)
chr7 (1-130)||(6790457-6790586)
chr7 (1-130)||(8660291-8660420)
chr7 (1-130)||(13332076-13332205)
chr7 (1-130)||(3148418-3148547)
chr7 (1-127)||(8655396-8655522)
chr7 (36-127)||(8630310-8630401)
chr7 (1-115)||(8610711-8610825)
chr7 (1-118)||(8584474-8584591)
chr7 (1-109)||(8602781-8602889)
chr7 (1-121)||(10492936-10493056)
chr7 (1-49)||(8572637-8572685)
chr7 (1-49)||(8582710-8582758)
chr7 (1-49)||(8546722-8546770)
chr7 (1-55)||(8577336-8577390)
chr7 (1-58)||(17261439-17261496)
chr7 (4-52)||(8538854-8538902)
chr7 (1-53)||(8591445-8591497)
chr7 (1-61)||(27829340-27829400)
[»] chr4 (3 HSPs)
chr4 (1-130)||(9322990-9323119)
chr4 (1-130)||(9334962-9335091)
chr4 (1-130)||(9377469-9377598)
[»] chr5 (2 HSPs)
chr5 (1-132)||(42554111-42554242)
chr5 (1-129)||(28220994-28221122)
[»] chr8 (2 HSPs)
chr8 (1-121)||(43745871-43745988)
chr8 (1-43)||(12529915-12529957)


Alignment Details
Target: chr2 (Bit Score: 167; Significance: 2e-89; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 16656655 - 16656396
Alignment:
Q  1 aagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatctctactctgttctgatgttccatccacacaccaacacatgaataagttgt 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||| | |||||||||||| |||||||||||||||||||    
T  16656655 aagcaacaaaagaaggtgttgttctgtttccctggtcattgtgtatgatctctgctctgttgtgacggtccatccacacagcaacacatgaataagttgt 16656556  T
Q  101 tccaaggtctattcccactgcacgtccttcatgnnnnnnngccataatctttcaactaaaac-nnnnnnnnnnnntcatttcttaaaataagagcataga 199  Q
    |||||||||||||||||||||||||||||||||       |||||||||||||||||||| |             |||||||||||||||||||||||||    
T  16656555 tccaaggtctattcccactgcacgtccttcatgtttttttgccataatctttcaactaaaccaaaaaaacaaaaatcatttcttaaaataagagcataga 16656456  T
Q  200 tcaaataataactagaatgcatttgtcatttcgaaaaataaaacatctttacctttgttt 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16656455 tcaaataataactagaatgcatttgtcatttcgaaaaataaaacatctttacctttgttt 16656396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 118
Target Start/End: Original strand, 43626371 - 43626484
Alignment:
Q  5 aacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatctctactctgttctgatgttccatccacacaccaacacatgaataagttgttcca 104  Q
    ||||||||||||||| ||||||||||||||||||||||| || |||||||||||  | |  |  || | ||||||| ||| ||| ||||| |||||||||    
T  43626371 aacaaaagaaggtgtagttctgtttccttggtcattgtggataatctctactcttctgttttcatcaagccacacagcaatacaagaatacgttgttcca 43626470  T
Q  105 aggtctattcccac 118  Q
    ||||||||||||||    
T  43626471 aggtctattcccac 43626484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 12235845 - 12235974
Alignment:
Q  1 aagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatctctactctgttctgatgttccatccacacaccaacacatgaataagttgt 100  Q
    |||||||||||||||| |||||||| || ||||| || ||||| |||||||| ||||     || ||||||  ||| ||  ||||||||||||| |||||    
T  12235845 aagcaacaaaagaaggggttgttctattgccttgatcgttgtgaatgatctcaactcgagagtgctgttcctgccatactgcaacacatgaatatgttgt 12235944  T
Q  101 tccaaggtctattcccactgcacgtccttc 130  Q
     ||||||||||| ||||| ||| |||||||    
T  12235945 accaaggtctatccccacagcaagtccttc 12235974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 12244458 - 12244329
Alignment:
Q  1 aagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatctctactctgttctgatgttccatccacacaccaacacatgaataagttgt 100  Q
    |||||||| ||||||||||||||||||| || || || ||||| ||||| || || |     || ||||||  ||| ||  ||||||||||||| |||||    
T  12244458 aagcaacacaagaaggtgttgttctgttgccctgatcgttgtgaatgatttcaacacgagagtgttgttcctgccatactgcaacacatgaatacgttgt 12244359  T
Q  101 tccaaggtctattcccactgcacgtccttc 130  Q
     ||||||||||||||||| |||||||||||    
T  12244358 accaaggtctattcccacggcacgtccttc 12244329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 14705510 - 14705639
Alignment:
Q  1 aagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatctctactctgttctgatgttccatccacacaccaacacatgaataagttgt 100  Q
    |||||||||||||||| |||||||| || ||||| || ||||| ||||| || ||||  |  || ||||||  ||| ||  |||||||||| || |||||    
T  14705510 aagcaacaaaagaaggagttgttctattgccttgatcgttgtgaatgatttcaactcgataatgttgttcctgccatactgcaacacatgagtacgttgt 14705609  T
Q  101 tccaaggtctattcccactgcacgtccttc 130  Q
     ||||||||||||||||| |||| ||||||    
T  14705610 accaaggtctattcccacagcacatccttc 14705639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 7543324 - 7543372
Alignment:
Q  1 aagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgat 49  Q
    |||||||||||||||||||||||||||| |||||||| ||||| |||||    
T  7543324 aagcaacaaaagaaggtgttgttctgttgccttggtcgttgtgaatgat 7543372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 16661121 - 16661004
Alignment:
Q  1 aagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatctctactctgttctgatgttccatccacacaccaacacatgaataagttgt 100  Q
    |||||||||||||||||||  || |||| ||||  || ||||| || ||||| |||||||| |  | ||||| ||| ||| |||||||||| || |||||    
T  16661121 aagcaacaaaagaaggtgtaattttgttgccttcatcgttgtggataatctcaactctgtttttctcttccaaccaaacagcaacacatgagtatgttgt 16661022  T
Q  101 tccaaggtctattcccac 118  Q
    ||| |||||||| |||||    
T  16661021 tcctaggtctatgcccac 16661004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 12257969 - 12257918
Alignment:
Q  1 aagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatctc 52  Q
    |||||||| ||||||| ||||||||||||||||| || ||||| ||||||||    
T  12257969 aagcaacacaagaaggcgttgttctgtttccttgatcgttgtgaatgatctc 12257918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 8e-33; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 4677595 - 4677464
Alignment:
Q  1 aagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatctctactctgttctgatgttccatccacacaccaacacatgaataagttgt 100  Q
    ||||||||||||||||||||||| |||| ||||| |||||||  || ||||| |||||||| ||||  |||| ||||||| |||||||||||||||| ||    
T  4677595 aagcaacaaaagaaggtgttgttttgttgccttgttcattgtaaataatctccactctgttgtgattctccagccacacagcaacacatgaataagtagt 4677496  T
Q  101 tccaaggtctattcccactgcacgtccttcat 132  Q
    |||||| ||||||||||| |||||||||||||    
T  4677495 tccaagatctattcccacagcacgtccttcat 4677464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 5 - 115
Target Start/End: Original strand, 15596110 - 15596220
Alignment:
Q  5 aacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatctctactctgttctgatgttccatccacacaccaacacatgaataagttgttcca 104  Q
    |||||||||||||||  |||||||||||||||||||||| || ||||| ||||| ||||| |  || | ||||||| ||||||| ||||| |||||||||    
T  15596110 aacaaaagaaggtgtaattctgtttccttggtcattgtggataatctcgactctattctgttcatcaagccacacagcaacacaagaatacgttgttcca 15596209  T
Q  105 aggtctattcc 115  Q
    |||||||||||    
T  15596210 aggtctattcc 15596220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 34465303 - 34465173
Alignment:
Q  1 aagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatctctactctgttctgatgttccatccacacaccaacacatgaataagttgt 100  Q
    ||||||||||||||||||| ||| |||| |||||||||||||  || |||||||||||  | || ||||||  ||| ||  |||||||||| || |||||    
T  34465303 aagcaacaaaagaaggtgtggttgtgttaccttggtcattgtcaataatctctactctactgtgttgttcctgccatactgcaacacatgagtaggttgt 34465204  T
Q  101 tccaaggtctattcccactgcacgtccttca 131  Q
     ||||||||||||||||| ||||||||||||    
T  34465203 gccaaggtctattcccacagcacgtccttca 34465173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 1302358 - 1302487
Alignment:
Q  1 aagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatctctactctgttctgatgttccatccacacaccaacacatgaataagttgt 100  Q
    ||||||||||||| ||||||||| |||| |||||||| ||||  |||||||||||||| || ||||  |||| ||||||| ||||||| |||||||| ||    
T  1302358 aagcaacaaaagacggtgttgttttgttgccttggtcgttgtagatgatctctactctattgtgattctccagccacacagcaacacacgaataagtagt 1302457  T
Q  101 tccaaggtctattcccactgcacgtccttc 130  Q
    ||||||||||||||| || |||||||||||    
T  1302458 tccaaggtctattccaacagcacgtccttc 1302487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 8647748 - 8647877
Alignment:
Q  1 aagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatctctactctgttctgatgttccatccacacaccaacacatgaataagttgt 100  Q
    ||||||||||||||||||| |||||||||||||| |||||||| || ||||| ||||| || || |  || | ||||||| ||||||| ||||| |||||    
T  8647748 aagcaacaaaagaaggtgtagttctgtttccttgatcattgtgaataatctcaactctattgtgttcatcaagccacacagcaacacacgaatacgttgt 8647847  T
Q  101 tccaaggtctattcccactgcacgtccttc 130  Q
    |||||||||||||||||||||| |||||||    
T  8647848 tccaaggtctattcccactgcaagtccttc 8647877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 8668512 - 8668641
Alignment:
Q  1 aagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatctctactctgttctgatgttccatccacacaccaacacatgaataagttgt 100  Q
    |||||||||||||||||||| ||| ||||||||| |||||||| || ||||| ||||| |  || || || | ||||||| ||||||||||||| |||||    
T  8668512 aagcaacaaaagaaggtgttattcggtttccttgatcattgtgaataatctcaactctttggtgttgatcaagccacacagcaacacatgaataggttgt 8668611  T
Q  101 tccaaggtctattcccactgcacgtccttc 130  Q
    |||||| |||||||||||||||||||||||    
T  8668612 tccaagatctattcccactgcacgtccttc 8668641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 7876889 - 7876760
Alignment:
Q  1 aagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatctctactctgttctgatgttccatccacacaccaacacatgaataagttgt 100  Q
    |||||||||||||||||||||||||||| ||||| |||||||| || || || ||||| || || |  || | ||||||| ||||||| ||||| |||||    
T  7876889 aagcaacaaaagaaggtgttgttctgttgccttgttcattgtgaataatttcgactctattgtgttcatcaagccacacagcaacacaggaatacgttgt 7876790  T
Q  101 tccaaggtctattcccactgcacgtccttc 130  Q
    |||||||||||||||||| |||||||||||    
T  7876789 tccaaggtctattcccaccgcacgtccttc 7876760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 6790457 - 6790586
Alignment:
Q  1 aagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatctctactctgttctgatgttccatccacacaccaacacatgaataagttgt 100  Q
    ||||||||||||||||||| ||| |||| |||||||||||||| || ||||| ||||| || || |  || | ||||||||||||||| ||||| |||||    
T  6790457 aagcaacaaaagaaggtgtggttttgttaccttggtcattgtgaataatctcaactctattgtgttcatcaagccacacaccaacacaagaatatgttgt 6790556  T
Q  101 tccaaggtctattcccactgcacgtccttc 130  Q
    ||| |||||||||||||| |||| ||||||    
T  6790557 tcccaggtctattcccacagcacatccttc 6790586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 8660291 - 8660420
Alignment:
Q  1 aagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatctctactctgttctgatgttccatccacacaccaacacatgaataagttgt 100  Q
    |||||||||| |||||||||||| ||||||||||||| ||||  |||||||| ||||  || ||||  |||| ||||||| ||||||| ||||| |||||    
T  8660291 aagcaacaaatgaaggtgttgttttgtttccttggtcgttgtagatgatctcgactcgattgtgattctccagccacacagcaacacacgaataggttgt 8660390  T
Q  101 tccaaggtctattcccactgcacgtccttc 130  Q
    ||||||||||||||| |  |||||||||||    
T  8660391 tccaaggtctattccaatagcacgtccttc 8660420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 13332205 - 13332076
Alignment:
Q  1 aagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatctctactctgttctgatgttccatccacacaccaacacatgaataagttgt 100  Q
    ||||||||||||||||||| ||||| |||||||| |||||||| || ||||| ||||| |  || |  || | ||||||| |||||||||| || |||||    
T  13332205 aagcaacaaaagaaggtgtagttctatttccttgatcattgtgaataatctcaactctttggtgttcatcaagccacacagcaacacatgagtaggttgt 13332106  T
Q  101 tccaaggtctattcccactgcacgtccttc 130  Q
    ||||||||| ||||||||||||||||||||    
T  13332105 tccaaggtcgattcccactgcacgtccttc 13332076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 3148418 - 3148547
Alignment:
Q  1 aagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatctctactctgttctgatgttccatccacacaccaacacatgaataagttgt 100  Q
    ||||||||||||||||||| ||| |||| |||||||||||||| || ||||| |||||||| || |  || | ||| ||| |||| || ||||| |||||    
T  3148418 aagcaacaaaagaaggtgtggttttgttgccttggtcattgtgaataatctcaactctgttgtgctcatcgagccaaacagcaacgcacgaatacgttgt 3148517  T
Q  101 tccaaggtctattcccactgcacgtccttc 130  Q
    ||||||||| ||||||||||||| ||||||    
T  3148518 tccaaggtcgattcccactgcacatccttc 3148547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 8655396 - 8655522
Alignment:
Q  1 aagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatctctactctgttctgatgttccatccacacaccaacacatgaataagttgt 100  Q
    ||||||||| ||||||||| ||||| || ||||| |||||||| || ||||| ||||| || ||||  || | ||||||| ||||||||||||| |||||    
T  8655396 aagcaacaacagaaggtgtagttctattgccttgatcattgtgaataatctcaactctattgtgatcgtcaagccacacagcaacacatgaataggttgt 8655495  T
Q  101 tccaaggtctattcccactgcacgtcc 127  Q
    ||| ||||||||||| || ||||||||    
T  8655496 tccgaggtctattccgacagcacgtcc 8655522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 127
Target Start/End: Original strand, 8630310 - 8630401
Alignment:
Q  36 tcattgtgtatgatctctactctgttctgatgttccatccacacaccaacacatgaataagttgttccaaggtctattcccactgcacgtcc 127  Q
    |||||||| || ||||| ||||||||||  | ||||| ||| ||||||||||| ||||| ||||||||||||||||||||||| ||| ||||    
T  8630310 tcattgtgaataatctcaactctgttcttttcttccaaccaaacaccaacacaagaataggttgttccaaggtctattcccacagcatgtcc 8630401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 8610711 - 8610825
Alignment:
Q  1 aagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatctctactctgttctgatgttccatccacacaccaacacatgaataagttgt 100  Q
    |||||||||||||||| || |||||||||||||| ||||| || || |||||  ||||||| |  ||||||  ||| ||| ||||||||||||| |||||    
T  8610711 aagcaacaaaagaaggagtggttctgtttccttgctcattatggattatctcagctctgttgttttgttcctgccatacagcaacacatgaataggttgt 8610810  T
Q  101 tccaaggtctattcc 115  Q
    |||||| || |||||    
T  8610811 tccaagatcaattcc 8610825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 8584591 - 8584474
Alignment:
Q  1 aagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatctctactctgttctgatgttccatccacacaccaacacatgaataagttgt 100  Q
    |||||||||| ||||||||  || | || ||||  || ||||| || ||||| ||||||||||  | ||||| ||| ||||||||||| ||||| |||||    
T  8584591 aagcaacaaaggaaggtgtgattttattgccttcatcgttgtgaataatctcaactctgttcttttcttccaaccaaacaccaacacaagaataggttgt 8584492  T
Q  101 tccaaggtctattcccac 118  Q
    ||||||||||||||||||    
T  8584491 tccaaggtctattcccac 8584474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 8602781 - 8602889
Alignment:
Q  1 aagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatctctactctgttctgatgttccatccacacaccaacacatgaataagttgt 100  Q
    |||||||||||||||| || |||||||||||||| |||||||| || |||||| | ||||| |  || |||  ||| ||| | ||||||||||| |||||    
T  8602781 aagcaacaaaagaaggagtagttctgtttccttgatcattgtgaataatctctgccctgttgttttggtcctgccaaacagctacacatgaataggttgt 8602880  T
Q  101 tccaaggtc 109  Q
    |||||||||    
T  8602881 tccaaggtc 8602889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 10493056 - 10492936
Alignment:
Q  1 aagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatctctactctgttctgatgttccatccacacaccaacacatgaataagttgt 100  Q
    ||||||||||||||||||| ||||| |||||||| |||||||| || || || ||||| |  || |  || | ||| ||| |||||||||| || |||||    
T  10493056 aagcaacaaaagaaggtgtagttctatttccttgatcattgtgaataatttcaactctttggtgttcatcaagccatacagcaacacatgagtaggttgt 10492957  T
Q  101 tccaaggtctattcccactgc 121  Q
    |||||| ||||||||||||||    
T  10492956 tccaagatctattcccactgc 10492936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 8572637 - 8572685
Alignment:
Q  1 aagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgat 49  Q
    |||||||| |||| || ||||||||||||||||||||||||||||||||    
T  8572637 aagcaacacaagagggagttgttctgtttccttggtcattgtgtatgat 8572685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 8582710 - 8582758
Alignment:
Q  1 aagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgat 49  Q
    |||||||| |||||||||||||| |||||||||| ||||||||||||||    
T  8582710 aagcaacacaagaaggtgttgttttgtttccttgatcattgtgtatgat 8582758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 8546722 - 8546770
Alignment:
Q  1 aagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgat 49  Q
    |||||||| |||||||||||||| |||||||||| |||||||| |||||    
T  8546722 aagcaacacaagaaggtgttgttttgtttccttgatcattgtgaatgat 8546770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 8577336 - 8577390
Alignment:
Q  1 aagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatctctac 55  Q
    |||||||| ||||||| || |||||||||||||| ||||||||||| || |||||    
T  8577336 aagcaacacaagaaggagtggttctgtttccttgatcattgtgtataatttctac 8577390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 17261439 - 17261496
Alignment:
Q  1 aagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatctctactct 58  Q
    |||||||||||||||| ||  || |||||||||| |||||||| |||||||| |||||    
T  17261439 aagcaacaaaagaaggagtaattttgtttccttgatcattgtgaatgatctcaactct 17261496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 8538854 - 8538902
Alignment:
Q  4 caacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatctc 52  Q
    ||||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  8538854 caacacaagaaggtgtggttttgtttccttgatcgttgtgtatgatctc 8538902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 8591445 - 8591497
Alignment:
Q  1 aagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatctct 53  Q
    |||||||||||||||||||  |||| |||||||| |||||||| || ||||||    
T  8591445 aagcaacaaaagaaggtgtaattctatttccttgatcattgtgaataatctct 8591497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 27829400 - 27829340
Alignment:
Q  1 aagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatctctactctgtt 61  Q
    |||||||| |||||||||||||  |||| ||||| |||||||| || ||||| ||||||||    
T  27829400 aagcaacacaagaaggtgttgtcttgttgccttgttcattgtgaataatctccactctgtt 27829340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 7e-27; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 9323119 - 9322990
Alignment:
Q  1 aagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatctctactctgttctgatgttccatccacacaccaacacatgaataagttgt 100  Q
    |||||||||||||||||||||||| ||||||||| |||||||| || ||||| ||||| |  || || || | ||||||| ||||||| ||||| |||||    
T  9323119 aagcaacaaaagaaggtgttgttcggtttccttgatcattgtgaataatctcaactctttggtgttgatcaagccacacagcaacacaagaataggttgt 9323020  T
Q  101 tccaaggtctattcccactgcacgtccttc 130  Q
    |||||| ||||| |||||||||||||||||    
T  9323019 tccaagatctatacccactgcacgtccttc 9322990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 9335091 - 9334962
Alignment:
Q  1 aagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatctctactctgttctgatgttccatccacacaccaacacatgaataagttgt 100  Q
    |||||||||||||||||||||||| ||||||||| |||||||| || ||||| ||||| |  || || || | ||||||| ||||||| ||||| |||||    
T  9335091 aagcaacaaaagaaggtgttgttcggtttccttgatcattgtgaataatctcaactctttggtgttgatcaagccacacagcaacacaagaataggttgt 9334992  T
Q  101 tccaaggtctattcccactgcacgtccttc 130  Q
    |||||| ||||| |||||||||||||||||    
T  9334991 tccaagatctatacccactgcacgtccttc 9334962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 9377598 - 9377469
Alignment:
Q  1 aagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatctctactctgttctgatgttccatccacacaccaacacatgaataagttgt 100  Q
    |||||||||||||||||||||||| ||||||||| |||||||| || ||||| ||||| |  || || || | ||||||| ||||||| ||||| |||||    
T  9377598 aagcaacaaaagaaggtgttgttcggtttccttgatcattgtgaataatctcaactctttggtgttgatcaagccacacagcaacacaagaataggttgt 9377499  T
Q  101 tccaaggtctattcccactgcacgtccttc 130  Q
    |||||| ||||| |||||||||||||||||    
T  9377498 tccaagatctatacccactgcacgtccttc 9377469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 42554242 - 42554111
Alignment:
Q  1 aagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatctctactctgttctgatgttccatccacacaccaacacatgaataagttgt 100  Q
    ||||||||||||||||||||||| |||| ||||| |||||||| || ||||| ||||| || || |  ||   |||||||  |||||| ||||| |||||    
T  42554242 aagcaacaaaagaaggtgttgttttgttgccttgatcattgtgaataatctcaactctattttgttcatcttcccacacagtaacacacgaatacgttgt 42554143  T
Q  101 tccaaggtctattcccactgcacgtccttcat 132  Q
    ||||||||||||||||||||||||||||||||    
T  42554142 tccaaggtctattcccactgcacgtccttcat 42554111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 28220994 - 28221122
Alignment:
Q  1 aagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatctctactctgttctgatgttccatccacacaccaacacatgaataagttgt 100  Q
    |||||||||||||||| |||||| |||| ||||| |||||||| || ||||| || || || || |  ||   ||||||| ||||||||||||| |||||    
T  28220994 aagcaacaaaagaaggagttgttttgttgccttgatcattgtgaataatctcaaccctattgtgttcatcttgccacacagcaacacatgaatacgttgt 28221093  T
Q  101 tccaaggtctattcccactgcacgtcctt 129  Q
    |||||| ||||||||||| |||| |||||    
T  28221094 tccaagatctattcccacagcacatcctt 28221122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 43745871 - 43745988
Alignment:
Q  1 aagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatctctactctgttctgatgttccatccacacaccaacacatgaataagttgt 100  Q
    |||||||||||||||   ||||| |||| ||||| |||||||| || ||||| ||||| || || |  ||   ||||||| ||||||| ||||| |||||    
T  43745871 aagcaacaaaagaag---ttgttttgttgccttgatcattgtgaataatctcaactctattttgttcatcttgccacacagcaacacacgaatacgttgt 43745967  T
Q  101 tccaaggtctattcccactgc 121  Q
    |||||||||||||||||||||    
T  43745968 tccaaggtctattcccactgc 43745988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 12529915 - 12529957
Alignment:
Q  1 aagcaacaaaagaaggtgttgttctgtttccttggtcattgtg 43  Q
    |||||||| |||||||||||||| |||||||||| ||||||||    
T  12529915 aagcaacacaagaaggtgttgttttgtttccttgatcattgtg 12529957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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