View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1396_low_39 (Length: 251)
Name: NF1396_low_39
Description: NF1396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1396_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 52065763 - 52065985
Alignment:
| Q |
1 |
aactagtatattttgtactcacattcgctataatgattannnnnnnattgatgttgatccaatcaaatctcgtatgttgtcaaatatcgaaacctcttgc |
100 |
Q |
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||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52065763 |
aactagtatattttgtactcacatttgctataat-attatttttttattgatgttgatccaatcaaatctcgtatgttgtcaaatatcgaaacctcttgc |
52065861 |
T |
|
| Q |
101 |
caattgaaaagnnnnnnnnn-gtatgtagtacagaaattttagaaatgtcaggaatggaatacaattaataatatgcatgacnnnnnnngtaagaataat |
199 |
Q |
| |
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|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
52065862 |
caattggaaagaaaaaaaaaagtatgtagtacagaaattttagaaatgtcaggaatggaatacaattaataatatgcatgactttttttgtaagaataat |
52065961 |
T |
|
| Q |
200 |
aataatatctatgacttttaaggt |
223 |
Q |
| |
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|||||||||||||| ||||||||| |
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|
| T |
52065962 |
aataatatctatgatttttaaggt |
52065985 |
T |
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