View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1396_low_40 (Length: 251)
Name: NF1396_low_40
Description: NF1396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1396_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 49583904 - 49583657
Alignment:
| Q |
1 |
tccctacatccacaccatctctgatatttgtaagacttacgaaattttccataatagaatgacaatatgtccttcatcttcttattgccgataaattttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49583904 |
tccctacatccacaccatctctgatatttgtaagacttacgaaattttccataatagaatgacaatatgtccttcatcttcttattgccgataaattttt |
49583805 |
T |
|
| Q |
101 |
tcacttcaacgaagttcttcccaaatatatataaaccaaggactaaaccggcctcttcgatttcagtccagttgtcacttcgagagccaggaacaagaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
49583804 |
tcacttcaacgaagttcttcccaaatatatataaaccaaggactaaaccggcctcttcaatttcagtccagttgtcacttcgagagccaggaacaagaat |
49583705 |
T |
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| Q |
201 |
ctgccctttatgttcatgctcctcatgcatcccaacctttgtttcttc |
248 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
49583704 |
ctgccctttatgttcatgctcctcatgcatcccaatctttgtttcttc |
49583657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 49 - 213
Target Start/End: Complemental strand, 49589153 - 49588989
Alignment:
| Q |
49 |
ccataatagaatgacaatatgtccttcatcttcttattgccgataaattttttcacttcaacgaagttcttcccaaatatatataaaccaaggactaaac |
148 |
Q |
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|||||||||||||||| | | |||||||| |||||||||| ||||| ||||||||| ||||||||||||||||||| |||| || |||||||||||| |
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| T |
49589153 |
ccataatagaatgacagtttatccttcattttcttattgcgtataaaccttttcacttgaacgaagttcttcccaaatgtataaaagccaaggactaaat |
49589054 |
T |
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| Q |
149 |
cggcctcttcgatttcagtccagttgtcacttcgagagccaggaacaagaatctgccctttatgt |
213 |
Q |
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|||||||||||||||||||||| | ||| ||| ||| ||| |||||||||||| |||||||||| |
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| T |
49589053 |
tggcctcttcgatttcagtccaggtatcagttcaagaaccatgaacaagaatcttccctttatgt |
49588989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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