View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1396_low_5 (Length: 507)
Name: NF1396_low_5
Description: NF1396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1396_low_5 |
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| [»] scaffold0026 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 383; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 7 - 456
Target Start/End: Original strand, 25812618 - 25813068
Alignment:
| Q |
7 |
gtagcataggttcttcacaatcaattatttcagccactgtgaaacatctatcacaccttgctgccacgtttgataccttcatatgaatttgtgtgatggt |
106 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |
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| T |
25812618 |
gtagtataggttcttcacaatcaattatttcagccactgtgaaacatctatcacaccttgcagccacgtttgataccttcatatgaatttgtgtgagggt |
25812717 |
T |
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| Q |
107 |
aattactttgcaagaaaaatccaatgacctcaaaaggtccaacttgtcatgtactataaatattatagagtatagtatctaatatctatccaaaaatgaa |
206 |
Q |
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| T |
25812718 |
aattactttgcaagaaaaatccaatgacctcaaaaggtccaacttgtcatgtactataaatattatagagtatagtatctaatatctatccaaaattgaa |
25812817 |
T |
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| Q |
207 |
gaatcaattcttctaacttcatcatgagtcattggcatattctttgttggtgaatatacaaatgtataaagaccttaaatcaaggtagggtttatttcta |
306 |
Q |
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| T |
25812818 |
gaatcaattcttctgacttcatcatgagtcattggcatattctttgttggtgaatatacaaatgtataaagaccttaaatcaaggtagggtttatttcta |
25812917 |
T |
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| Q |
307 |
gaaccaaatggacttaaagattagaagatacaaatacataactactaattttgaaatggatggaatttattccc-nnnnnnnnctctgtttcaacttaca |
405 |
Q |
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| T |
25812918 |
gaaccaaatggacttaaagattagaagatacaaatacagaactactaattttgaattggatggaatttattccctttttttttctctgtttcaacttaca |
25813017 |
T |
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| Q |
406 |
agactttaatcatatagggaggttaagtgcatgtgattctctaagtatctt |
456 |
Q |
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| T |
25813018 |
agactttaatcatatagggacgttaagtgcatgtgattctctatgtatctt |
25813068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 70 - 333
Target Start/End: Original strand, 25799866 - 25800122
Alignment:
| Q |
70 |
ccacgtttgataccttcatatgaatttgtgtgatggtaattactttgc-aagaaaaatccaatgacctcaaaaggtccaacttgtcatgtact---ataa |
165 |
Q |
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| T |
25799866 |
ccacatttgataccttcat--gaatttgtg--atggtaaatgctttgctaagaaaaatgagatgacctcaaaaggaccaacttgtcatgtactactataa |
25799961 |
T |
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| Q |
166 |
atattatagagtatagtatctaatatctatccaaaaatgaagaatcaattcttctaacttcatcatgagtcattggcatattctttgttggtgaatatac |
265 |
Q |
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| T |
25799962 |
atatttaagagtatagtatctaatatctatccaaaaatgaagaatcagttcttcaaacttcatcatgggtcattg------tcattgctggtgaagatac |
25800055 |
T |
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| Q |
266 |
aaatgtataaagaccttaaatcaaggtagggtttatttctagaaccaaatggacttaaagattagaag |
333 |
Q |
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| T |
25800056 |
aaatgaat-tggaccttaaatcgaggtagaatttcttcaaagaatcaaatggacttcaagattagaag |
25800122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026 (Bit Score: 85; Significance: 3e-40; HSPs: 1)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 70 - 333
Target Start/End: Complemental strand, 114804 - 114548
Alignment:
| Q |
70 |
ccacgtttgataccttcatatgaatttgtgtgatggtaattactttgc-aagaaaaatccaatgacctcaaaaggtccaacttgtcatgtacta---taa |
165 |
Q |
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|||| |||||||||||||| ||||||||| ||||||| | |||||| ||||||||| |||||||||||||| |||||||||||||||||| ||| |
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| T |
114804 |
ccacatttgataccttcat--gaatttgtg--atggtaaatgctttgctaagaaaaatgtgatgacctcaaaaggaccaacttgtcatgtactactataa |
114709 |
T |
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| Q |
166 |
atattatagagtatagtatctaatatctatccaaaaatgaagaatcaattcttctaacttcatcatgagtcattggcatattctttgttggtgaatatac |
265 |
Q |
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| T |
114708 |
atatttaagagtatagtatctaatatctatccaaaaatgaagaatcagttcttcaaacttcatcatgggtcattg------tcattgctggtgaagatac |
114615 |
T |
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| Q |
266 |
aaatgtataaagaccttaaatcaaggtagggtttatttctagaaccaaatggacttaaagattagaag |
333 |
Q |
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| T |
114614 |
aaatgaat-tggaccttaaatcgaggtagaatttcttcaaagaatcaaatggacttcaagattagaag |
114548 |
T |
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