View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1396_low_7 (Length: 497)
Name: NF1396_low_7
Description: NF1396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1396_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 30 - 239
Target Start/End: Original strand, 2442394 - 2442603
Alignment:
| Q |
30 |
gaccttgcatcttgagacattgttgttattttcatctgtattatttgtttgttagttctctcatcgtgcattacattgttatagttcacaaccatgcatt |
129 |
Q |
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| T |
2442394 |
gaccttgcatcttgagacattgttgttattttcatctgtattatttttttgttagttctctcatcgtgcattacattgttatagttcacaaccatgcatt |
2442493 |
T |
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| Q |
130 |
gagttttatggttttgcatttgattttgtatgatcctaataaagacttggatgtattgcgaaggcactattactttttgaaatatctgcgcaaggatatg |
229 |
Q |
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| T |
2442494 |
gagttttatggttttacatttgattttgtatgatcctaataaagacttggatgtattgcaaaggcaatattactttttgaaatatctgcgcaaggatatg |
2442593 |
T |
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| Q |
230 |
cacatattta |
239 |
Q |
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|||||||||| |
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| T |
2442594 |
cacatattta |
2442603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 326 - 432
Target Start/End: Original strand, 2442665 - 2442771
Alignment:
| Q |
326 |
tggaatacgaagactattttgatattttttactatataatactttgttttctttgaattgtgtctcagatggtgccttcttgaattcatattctaatgtc |
425 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2442665 |
tggaatacgaagacaattttgatattttttactatataatactttgttttctttgaattgtgtctcagatggtgccttcttgaattcatattctaatgtc |
2442764 |
T |
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| Q |
426 |
aatttaa |
432 |
Q |
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||||||| |
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| T |
2442765 |
aatttaa |
2442771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 293 - 325
Target Start/End: Original strand, 2442600 - 2442632
Alignment:
| Q |
293 |
tttatcagacatgtggttctttgtgaccgttag |
325 |
Q |
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| T |
2442600 |
tttatcagacatgtggttctttgtgactgttag |
2442632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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