View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1396_low_8 (Length: 490)

Name: NF1396_low_8
Description: NF1396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1396_low_8
NF1396_low_8
[»] chr1 (3 HSPs)
chr1 (97-481)||(2248770-2249151)
chr1 (231-300)||(14138190-14138259)
chr1 (97-160)||(14138471-14138533)
[»] chr4 (1 HSPs)
chr4 (295-418)||(9813605-9813725)
[»] chr5 (3 HSPs)
chr5 (297-410)||(40800941-40801054)
chr5 (240-299)||(40801081-40801139)
chr5 (97-160)||(40801227-40801290)
[»] chr2 (1 HSPs)
chr2 (96-172)||(24866815-24866891)
[»] chr8 (2 HSPs)
chr8 (97-155)||(5461363-5461421)
chr8 (106-160)||(17882635-17882689)
[»] chr6 (1 HSPs)
chr6 (97-160)||(18701687-18701750)


Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 97 - 481
Target Start/End: Original strand, 2248770 - 2249151
Alignment:
Q  97 tctccaacctaaaataatgtaacagttgtaaggtaaaatcgaaaatagtaaatttacaaagttaattaccatgttgcaatgtgttctaatccctcttgtg 196  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||     
T  2248770 tctccaacctaaaataatgtaacagttgtaaggtaaaatcgaaagtagtaaatgtacaaagttaattaccatgttgcaatgtgttctaatccctcttgt- 2248868  T
Q  197 tatatatatcatgattaatattttctaattcatcttagttaatttactgatacgtaaccaccttttttgttaaacgaaagttagatatttattgagcatc 296  Q
     |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  2248869 -atatatatcatggttaatattttctaattcatcttagttaatttactgatacgtaaccacctttttcgttaaacgaaagttagatatttattgagcatc 2248967  T
Q  297 aaaccatatttactgatatgtaaccgccttcctttcctcttcgttgtctcctttcaccctttgcaacaattatggaattaggactcaaatgacatggaga 396  Q
    |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  2248968 aaaccatatttactgatatgtaactgccttcctttcctcttcg-tgtctcctttcaccctttgcaacaattatgaaattaggactcaaatgacatggaga 2249066  T
Q  397 aaacaacataaaagtagaaaatctaatcattgtcgtgcgtggtggtaaacggctccgtcttcccgtctgtcattcaattctctgc 481  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| ||||||||| ||||||||||    
T  2249067 aaacaacataaaagtagaaaatctaatcattgtcgtgcgtggtggtaaactactccgtcttcccatctgtcattgaattctctgc 2249151  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 231 - 300
Target Start/End: Complemental strand, 14138259 - 14138190
Alignment:
Q  231 ttagttaatttactgatacgtaaccaccttttttgttaaacgaaagttagatatttattgagcatcaaac 300  Q
    |||||||||||||||||| |||||||||||||   ||| | ||||||||||||||||||||||| |||||    
T  14138259 ttagttaatttactgatatgtaaccaccttttcccttagaggaaagttagatatttattgagcaacaaac 14138190  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 97 - 160
Target Start/End: Complemental strand, 14138533 - 14138471
Alignment:
Q  97 tctccaacctaaaataatgtaacagttgtaaggtaaaatcgaaaatagtaaatttacaaagtta 160  Q
    |||||||||||||||| ||||||||||||||||||| || |||| ||||||||||| |||||||    
T  14138533 tctccaacctaaaata-tgtaacagttgtaaggtaacatagaaagtagtaaatttagaaagtta 14138471  T

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Target: chr4 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 295 - 418
Target Start/End: Complemental strand, 9813725 - 9813605
Alignment:
Q  295 tcaaaccatatttactgatatgtaaccgccttcctttcctcttcgttgtctcctttcaccctttgcaacaattatggaattaggactcaaatgacatgga 394  Q
    |||||||||||||| |||||||||||||||||||||| ||||| |||   |||||||||| ||||||||||||||| || ||||||||||||||||||||    
T  9813725 tcaaaccatatttattgatatgtaaccgccttccttttctctttgtt---tcctttcaccgtttgcaacaattatgtaactaggactcaaatgacatgga 9813629  T
Q  395 gaaaacaacataaaagtagaaaat 418  Q
    ||||||| ||||||||||||||||    
T  9813628 gaaaacagcataaaagtagaaaat 9813605  T

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Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 297 - 410
Target Start/End: Complemental strand, 40801054 - 40800941
Alignment:
Q  297 aaaccatatttactgatatgtaaccgccttcctttcctcttcgttgtctcctttcaccctttgcaacaattatggaattaggactcaaatgacatggaga 396  Q
    |||||||||||||| ||||||||||  ||||||||||||||||| || |||||||||||||||| ||||||||||||| ||||||||||| ||||| | |    
T  40801054 aaaccatatttactaatatgtaaccatcttcctttcctcttcgtcgtttcctttcaccctttgcgacaattatggaataaggactcaaatcacatgcaaa 40800955  T
Q  397 aaacaacataaaag 410  Q
     |||||||||||||    
T  40800954 caacaacataaaag 40800941  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 240 - 299
Target Start/End: Complemental strand, 40801139 - 40801081
Alignment:
Q  240 ttactgatacgtaaccaccttttttgttaaacgaaagttagatatttattgagcatcaaa 299  Q
    ||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||    
T  40801139 ttactgatacgtaaccaccttttatgttaaa-ggaagttagatatttattgagcatcaaa 40801081  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 97 - 160
Target Start/End: Complemental strand, 40801290 - 40801227
Alignment:
Q  97 tctccaacctaaaataatgtaacagttgtaaggtaaaatcgaaaatagtaaatttacaaagtta 160  Q
    ||||||||||||| ||||||||||||||||| ||||||| ||||  |||| || ||||||||||    
T  40801290 tctccaacctaaattaatgtaacagttgtaatgtaaaattgaaaggagtagatgtacaaagtta 40801227  T

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Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 96 - 172
Target Start/End: Original strand, 24866815 - 24866891
Alignment:
Q  96 atctccaacctaaaataatgtaacagttgtaaggtaaaatcgaaaatagtaaatttacaaagttaattaccatgttg 172  Q
    |||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||    
T  24866815 atctccaacctaaaataatgtaacagttgtaaggtaaaatagaaagtagtaaatgtacaaagttaattaccatgttg 24866891  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 97 - 155
Target Start/End: Original strand, 5461363 - 5461421
Alignment:
Q  97 tctccaacctaaaataatgtaacagttgtaaggtaaaatcgaaaatagtaaatttacaa 155  Q
    ||||||||||||||||||| ||||||||||||||||||| |||| || ||||| |||||    
T  5461363 tctccaacctaaaataatggaacagttgtaaggtaaaatagaaagtaataaatgtacaa 5461421  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 160
Target Start/End: Complemental strand, 17882689 - 17882635
Alignment:
Q  106 taaaataatgtaacagttgtaaggtaaaatcgaaaatagtaaatttacaaagtta 160  Q
    ||||||||||||||||||||||||||||||  |||  ||||||| |||| |||||    
T  17882689 taaaataatgtaacagttgtaaggtaaaataaaaagaagtaaatgtacacagtta 17882635  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 97 - 160
Target Start/End: Original strand, 18701687 - 18701750
Alignment:
Q  97 tctccaacctaaaataatgtaacagttgtaaggtaaaatcgaaaatagtaaatttacaaagtta 160  Q
    |||||||| |||| ||||||||||||||||| ||||||| ||||  |||| || ||||||||||    
T  18701687 tctccaacgtaaattaatgtaacagttgtaatgtaaaattgaaaggagtagatgtacaaagtta 18701750  T

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