View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1396_low_9 (Length: 483)
Name: NF1396_low_9
Description: NF1396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1396_low_9 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 72 - 483
Target Start/End: Complemental strand, 49584322 - 49583915
Alignment:
| Q |
72 |
cgaccagaacaacttcattggattttacatcatcaacatgggggcatataagatcnnnnnnncctttaccgattgctaatccatcaacaagggctttgag |
171 |
Q |
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| T |
49584322 |
cgaccagaacagcttcattggattttacatcatcaacatgggggcatataagatctttttttcctttaccgattgctaatccatcaacaagggctttgag |
49584223 |
T |
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| Q |
172 |
cccaattaaatttttcagagtcgaaaaataatcttctggactaatgttcctttctgcaagtgtctctgacacctaccaatcaattgaacatagcaaataa |
271 |
Q |
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| T |
49584222 |
cccaattaaatttttcagagtcgaaaaataatcttctggactaatgttcctctctgcaagtgtctctgacacctaccaatcaattgaacatagcaa---- |
49584127 |
T |
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| Q |
272 |
taagtatggaagacaaatcaataagtatagatccaatccatgacagtggacggagtaacaatcgatattaaaatgaaaaactttgaaattgtttatgtca |
371 |
Q |
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| T |
49584126 |
taagtatggaagacaaatcaataagtatagatccaatccatgacaatggacggagtaacaatcgatattaaaatgaaaaactttgaaattgtttatgtca |
49584027 |
T |
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| Q |
372 |
ttacctcaagtaattcattttgaacttcctccggtacattcggcatcagacgaaacaaaagctcacgttgccttgattcagtgaaaattttatgccctaa |
471 |
Q |
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| T |
49584026 |
ttacctcaagtaattcattttgaacttcctccggtacattcggtatcagacgaaacaaaagctcacgttgccttgattcagtgaaaattttatgccctaa |
49583927 |
T |
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| Q |
472 |
gttgcatttctt |
483 |
Q |
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| T |
49583926 |
gttgcatttctt |
49583915 |
T |
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