View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13970_high_10 (Length: 357)
Name: NF13970_high_10
Description: NF13970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13970_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 24 - 346
Target Start/End: Original strand, 34082241 - 34082563
Alignment:
| Q |
24 |
gggacatcatcatcatggcatgctaaccaaatgagaatttagctttatttgtgtaccattttcaagattagaatttagcttcatttgtgtaggttttcat |
123 |
Q |
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| T |
34082241 |
gggacatcatcatcatggcatgctaaccaaatgagaatttagctttatttgtgtaccattttcaagattagaatttagcttcatttgtgtaggttttcat |
34082340 |
T |
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| Q |
124 |
taacatttttcagccaaatgccaagttaaaagacaacgtcagaaagattgggagcaaggactgcaaagtgagcacattatcttcaatcaaatccttgacc |
223 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
34082341 |
taacatttttcagccaaatgccaagttaaaagacaacgtcagaaaaattgggagcaaggactgcagagtgagcacattatcttcaatcaaatccttgacc |
34082440 |
T |
|
| Q |
224 |
gtaaacttcaacatcatggatgtcaacatatggaaattggcaacaaagagggataaactttatctaatcattataccaaaatcaaagatcaccagctccc |
323 |
Q |
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| T |
34082441 |
gtaaactttaacatcatggatgtcaacatatggaacttggcaacaaagagggataaactttatctaatcattataccaaaatcaaagatcaccagctccc |
34082540 |
T |
|
| Q |
324 |
accggaatctctgagaataatct |
346 |
Q |
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| T |
34082541 |
accggaatctctgagaataatct |
34082563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 113; Significance: 4e-57; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 165 - 346
Target Start/End: Complemental strand, 29796655 - 29796479
Alignment:
| Q |
165 |
gaaagattgggagcaaggactgcaaagtgagcacattatcttcaatcaaatccttgaccgtaaacttcaacatcatggatgtcaacatatggaaattggc |
264 |
Q |
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| T |
29796655 |
gaaaaattgggagcaaggactgcagagagagcacattatcttcaatcaaatctttgaccatgaacttcaacatcatg----tcaaca-atggaacttggc |
29796561 |
T |
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| Q |
265 |
aacaaagagggataaactttatctaatcattataccaaaatcaaagatcaccagctcccaccggaatctctgagaataatct |
346 |
Q |
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| T |
29796560 |
aactaagagggataaactttatccaatcattataccaaaatcaaagatcactagctcctaccggaatctctgagaataatct |
29796479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 63 - 143
Target Start/End: Complemental strand, 29796804 - 29796725
Alignment:
| Q |
63 |
tagctttatttgtgtaccattttcaagattagaatttagcttcatttgtgtaggttttcattaacatttttcagccaaatg |
143 |
Q |
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| T |
29796804 |
tagccttatttgtgtaccattttcaaaattagaatttagcttcatttgtgtagg-ctccattaacattttccagccaaatg |
29796725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 60
Target Start/End: Complemental strand, 29796859 - 29796830
Alignment:
| Q |
31 |
catcatcatggcatgctaaccaaatgagaa |
60 |
Q |
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| T |
29796859 |
catcatcatggcatgctaaccaaatgagaa |
29796830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 192 - 344
Target Start/End: Complemental strand, 28968300 - 28968147
Alignment:
| Q |
192 |
tgagcacattatcttcaatcaaatccttgaccgtaaacttcaacatcatggatgtcaacatat---ggaaattggcaacaaagagggataaactttatct |
288 |
Q |
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|||||| ||||| |||||||||||||||||| | |||||||||||||||||||||||||||| |||| ||| ||||||| ||| ||||| |||| |
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| T |
28968300 |
tgagcatattattttcaatcaaatccttgac--ttaacttcaacatcatggatgtcaacatattatggaacctggtaacaaaggggggcaaactctatcc |
28968203 |
T |
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| Q |
289 |
aatcattataccaaaatcaaagatcaccagctcccaccggaatctctgagaataat |
344 |
Q |
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|||| |||||||||||| |||||||||||||||| ||| ||||||||||||||||| |
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| T |
28968202 |
aatccttataccaaaattaaagatcaccagctcctacctgaatctctgagaataat |
28968147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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