View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13970_high_16 (Length: 268)
Name: NF13970_high_16
Description: NF13970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13970_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 7e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 785380 - 785634
Alignment:
| Q |
1 |
atgtcgatataaatggagagtatgatttaccaaaataataattgaaactaggagtggagggcatgactctgtttatattannnnnnncaagaaatagact |
100 |
Q |
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| T |
785380 |
atgtcgatataaatggagagtatgatttaccaaaataataattgaaactaggagtggagggcatgactctgtttatattatttttttcaagaaatagact |
785479 |
T |
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| Q |
101 |
atcttttacgcgcagttgttaagattaaatctctcaagttacttaaaacaaattaaatacttcattgaaagataactttctatagtnnnnnnnnnnnnnn |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
785480 |
atcttttacgcgcagttgttaagatt-aatctctcaagttacttaaaacaaattaaatacttcattgaaagataactttctatagtaaaaaagagcaaaa |
785578 |
T |
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| Q |
201 |
nnnttacacaatcgaaagatatcttccgataaatctagggggcctcacaacaacat |
256 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
785579 |
aaattacacaatcgaaagatatcttccgataaatctagggggcctcacaacaacat |
785634 |
T |
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