View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13970_high_21 (Length: 227)
Name: NF13970_high_21
Description: NF13970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13970_high_21 |
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Alignment Details
Target: chr8 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 45162796 - 45162575
Alignment:
| Q |
1 |
aaatcaactctctaacgcaaacccacgtcagattctgaccgacccggcccagattcatgacatcccaacccaaattcgacgagaacgttcaataaaacaa |
100 |
Q |
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|||||||||||| ||||||||||||||||||||| |||||||| | |||||||||||| |||||| ||| ||||||||||||| ||||||||||||||| |
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| T |
45162796 |
aaatcaactctccaacgcaaacccacgtcagatttcgaccgacctgacccagattcatgtcatcccgacctaaattcgacgagagcgttcaataaaacaa |
45162697 |
T |
|
| Q |
101 |
ttggggttttgattttggatttgttcacagttaacacaaatgaaaattatttcctcatattcgttcaataataaaacagttgggctgaaacaattggatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
45162696 |
ttggggttttgattttggatttgttcacagttaacacaaatgaaaattatttcctcagattcgttcaataataaaacagttgggctgaaacaattggatt |
45162597 |
T |
|
| Q |
201 |
cgacggtgaagaacttgtaaat |
222 |
Q |
| |
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|| ||||||||||||||||||| |
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| T |
45162596 |
cgtcggtgaagaacttgtaaat |
45162575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 28869385 - 28869164
Alignment:
| Q |
1 |
aaatcaactctctaacgcaaacccacgtcagattctgaccgacccggcccagattcatgacatcccaacccaaattcgacgagaacgttcaataaaacaa |
100 |
Q |
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|||||||||||| ||| ||||||||||||||||| |||||||| | |||||||||||| |||||| |||||||||||| |||||||||||||||||||| |
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| T |
28869385 |
aaatcaactctccaacacaaacccacgtcagatttcgaccgacctgacccagattcatgtcatcccgacccaaattcgatgagaacgttcaataaaacaa |
28869286 |
T |
|
| Q |
101 |
ttggggttttgattttggatttgttcacagttaacacaaatgaaaattatttcctcatattcgttcaataataaaacagttgggctgaaacaattggatt |
200 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
28869285 |
ttggggttttgattttggatttgttcacagataacacaaatgaaaattatttcctcaaattcgttcaataataaaacagttgggctgaaacaattggatt |
28869186 |
T |
|
| Q |
201 |
cgacggtgaagaacttgtaaat |
222 |
Q |
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|| ||||||||||||||||||| |
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| T |
28869185 |
cgtcggtgaagaacttgtaaat |
28869164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 31891795 - 31891613
Alignment:
| Q |
1 |
aaatcaactctctaacgcaaacccacgtcagattctgaccgacccggcccagattcatgacatcccaacccaaattcgacgagaacgttcaataaaacaa |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| ||| |||| | |||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
31891795 |
aaatcaactctccaacgcaaacccacgtcagatttcgactgacctgacccagattcatgtcatcctgacccaaattcgacgagaacgttcaataaaacaa |
31891696 |
T |
|
| Q |
101 |
ttggggttttgattttggatttgttcacagttaacacaaatgaaaattatttcctcatattcgttcaataataaaacagttgg |
183 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
31891695 |
ttggggttttgattttggatttgttcacagttaacacaaatgaaaattatttcctcagattcgttcaataataaaacagttgg |
31891613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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