View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13970_high_5 (Length: 499)
Name: NF13970_high_5
Description: NF13970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13970_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 18 - 485
Target Start/End: Original strand, 28209368 - 28209835
Alignment:
| Q |
18 |
atgatatatataagcaatttataattgtacctgtaagaaaacatcttgatatcacaatcgggttttcttccataatccacatccatttgtttgatttgtt |
117 |
Q |
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| T |
28209368 |
atgatatatataagcaatttataattgtacctgtaagaaaacatcttgatatcacaatcgggttttcttccataatccacatccattcgtttgatttgtt |
28209467 |
T |
|
| Q |
118 |
cacaagatgaaagaaaagggacgttgaccatatgcaaactaccaatttgcacaccaatgtttccactaacatacacgtcaaacaccatctcatatgcctt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28209468 |
cacaagatgaaagaaaagggacgttgaccatatgcaaactaccaatttgcacaccaatgtttccactaacatacacgtcaaacaccatctcatatgcctt |
28209567 |
T |
|
| Q |
218 |
gatgtctgattttaaatcatctgtagcatatacgttaacattttcatcatttgttgtcattgtcatatccaaatttgtgtcatttttaggcacttgagag |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
28209568 |
gatgtctgattttaaatcatctgtagcatatacgttaacattttcatcatttgttgtcattgtcatatccaaatttgtgtcatttttaggcacctgagag |
28209667 |
T |
|
| Q |
318 |
aatcctttaactttagtcctacctaataagacatcattactgattacctctacaaaaagaggaccatacaaaagttttaactcttcattcttgtttgaga |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28209668 |
aatcctttaactttagtcctacctaataagacatcattactgattacctctacaaaaagaggaccatacaaaagttttaactcttcattcttgtttgaga |
28209767 |
T |
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| Q |
418 |
atcttaaacccaaatttattattgcatccattttttgtgagctagaatccacttgtaactttgtcatg |
485 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28209768 |
atcttaaacccagatttattattgcatccattttttgtgagctagaatccacttgtaactttgtcatg |
28209835 |
T |
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