View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13970_high_8 (Length: 398)
Name: NF13970_high_8
Description: NF13970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13970_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 364; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 6 - 381
Target Start/End: Original strand, 46129957 - 46130332
Alignment:
| Q |
6 |
atgagatgattttgacctcactcacaaatattatatctgcagtccatggcagcatggactctgatcaatgtcaccgcgggattgtctgagcatacaaata |
105 |
Q |
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| T |
46129957 |
atgagatgattttgacctcactcacaaatattatatctgcagtccatggcagcatggactctgatcaatgtcaccgcgggattgtctgagcatacaaata |
46130056 |
T |
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| Q |
106 |
ctgtgattgaacatggtgctgttcctctccttgtgaagcttctgagctctggtagtgatgacggcaaagaacaggtgatgtcttcctcaatctcgtggca |
205 |
Q |
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| T |
46130057 |
ctgtgattgaacatggtgctgttcctctccttgtgaagcttctgagctctggtagtgatgacggcaaagaacaggtgatgtcttcctcaatctcgtggca |
46130156 |
T |
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| Q |
206 |
taattgctttgagaaaactatcgtgtatgcatgcatctatgtatgagtcgatcgcttacagaatttcaacgtctcatgtattgaacaggcattatgggca |
305 |
Q |
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| T |
46130157 |
taattgctttgagaaaactatcgtgtatgcatgtatctatgtatgagtcgatcgcttacacaatttcaatgtctcatgtattgaacaggcattatgggca |
46130256 |
T |
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| Q |
306 |
ttaggtaatattgctggtagttctgagaccgcgaaggatgttgttttaaatcatggtgcacttcctccattattgt |
381 |
Q |
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| T |
46130257 |
ttaggtaatattgctggtagttctgagaccgcgaaggatgttgttttaaatcatggtgcacttcctccattattgt |
46130332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 32 - 381
Target Start/End: Original strand, 46123974 - 46124323
Alignment:
| Q |
32 |
aatattatatctgcagtccatggcagcatggactctgatcaatgtcaccgcgggattgtctgagcatacaaatactgtgattgaacatggtgctgttcct |
131 |
Q |
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| T |
46123974 |
aatattatatctgcagtccatggcagcatggactctgatcaatgtcactgcgggattgtctgaacatacaaatactgtgattgaacatggtgctgttcct |
46124073 |
T |
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| Q |
132 |
ctccttgtgaagcttctgagctctggtagtgatgacggcaaagaacaggtgatgtcttcctcaatctcgtggcataattgctttgagaaaactatcgtgt |
231 |
Q |
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| T |
46124074 |
ctgcttgtgaagcttctgagctctggcagtgatgacggcaaagaacaggtgatgtcttcctcaatctcgtggcataattgctttgagaaaactatcgtgt |
46124173 |
T |
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| Q |
232 |
atgcatgcatctatgtatgagtcgatcgcttacagaatttcaacgtctcatgtattgaacaggcattatgggcattaggtaatattgctggtagttctga |
331 |
Q |
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| T |
46124174 |
atgcatgtatctatgtatgagtcgatcgcttacacaatttcaatgtctcatgtattgaacaggcattatgggcattaggtaatattgctggcaattccct |
46124273 |
T |
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| Q |
332 |
gaccgcgaaggatgttgttttaaatcatggtgcacttcctccattattgt |
381 |
Q |
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|||||| | |||| ||||||||||||||||||||||| ||||| |||||| |
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| T |
46124274 |
gaccgcaagggatattgttttaaatcatggtgcactttctccactattgt |
46124323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 6 - 381
Target Start/End: Original strand, 46702741 - 46703116
Alignment:
| Q |
6 |
atgagatgattttgacctcactcacaaatattatatctgcagtccatggcagcatggactctgatcaatgtcaccgcgggattgtctgagcatacaaata |
105 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||| || | ||||||||||||||||||||||||| |
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| T |
46702741 |
atgagatgattttgacctcactcacagatattatatctgcagtccatggcagcatggacactgaccaatatcgcggcgggattgtctgagcatacaaata |
46702840 |
T |
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| Q |
106 |
ctgtgattgaacatggtgctgttcctctccttgtgaagcttctgagctctggtagtgatgacggcaaagaacaggtgatgtcttcctcaatctcgtggca |
205 |
Q |
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|||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
46702841 |
ctgtgattgaacatggtgctgttcctctgcttgtgcagcttctgagctctggttgtgatgacggcaaagaacaggtgatgtcttcttcaatctcttggca |
46702940 |
T |
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| Q |
206 |
taattgctttgagaaaactatcgtgtatgcatgcatctatgtatgagtcgatcgcttacagaatttcaacgtctcatgtattgaacaggcattatgggca |
305 |
Q |
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||||||| |||||||||| || ||||||||||| ||||||||||| || |||| ||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
46702941 |
taattgcattgagaaaaccattgtgtatgcatgtatctatgtatgtgttgatcccttacagaatttcaatgtctcatgtattgaacaggcattatgggca |
46703040 |
T |
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| Q |
306 |
ttaggtaatattgctggtagttctgagaccgcgaaggatgttgttttaaatcatggtgcacttcctccattattgt |
381 |
Q |
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||||||||||||||||| | ||| |||||| | |||| ||||||||||| ||||||||||| |||||||||||| |
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| T |
46703041 |
ttaggtaatattgctggcaattccctgaccgcaagggatcttgttttaaataatggtgcactttctccattattgt |
46703116 |
T |
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