View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13970_low_1 (Length: 740)
Name: NF13970_low_1
Description: NF13970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13970_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 438; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 15 - 480
Target Start/End: Complemental strand, 298912 - 298452
Alignment:
| Q |
15 |
cacagaccaattgaaattgcagtctctagcttatcaccagaccttaattccagctaaccgtagagactcaatggcttctgtttctccctcttgcagcttg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
298912 |
cacagaccaattgaaattgcagtctctagcttatcaccagaccttaattccagctagccgtagagactcaatggcttctgtttctccctcttgcagcttg |
298813 |
T |
|
| Q |
115 |
tcctctcaactctagttgctccaagtaggtttggtttgcattctacatgtgctgttctttgacgtagttttgtagctcggtcaatcaatgaagttccggc |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
298812 |
tcctctcaactctagttgctccaagtaggtttggtttgcattctacatgtgctgttctttgacgtagttttgtagctcggtcaatcaatgaagttccggc |
298713 |
T |
|
| Q |
215 |
ctcttcatacatgctttgccaatccttaaattctgcatctgaaagatcacttgaggcaattacaagagtccttaaaccttggaagaatattcactcaaat |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
298712 |
ctcttcatacatgctttgccaatccttaaattctgcatctgaaagatcacttgaggcaattacaagagtccttaaaccttggaagaatattcactcaaat |
298613 |
T |
|
| Q |
315 |
gattctgagttggatgcttaattcaaatgttgcttgcatagtcatttgctaaaatgctaaactttgaaacgtcagcacttttaacaaacattgtcgggaa |
414 |
Q |
| |
|
|| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
298612 |
gact-----ttggatgcttaattcaaatgttgcttgcatagtcatttgctaaaatgctaaactttgaaacgtcagcacttttaacaaacattgtcgggaa |
298518 |
T |
|
| Q |
415 |
atccaatacagcatacatcctcttttgcactctatcaaactcatgcaggcccgatacgtccaacct |
480 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
298517 |
atccaatacagcatacatcctcttttgcactctatcaaactcatgcaggcccgatacgtccaacct |
298452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 494 - 722
Target Start/End: Complemental strand, 298382 - 298154
Alignment:
| Q |
494 |
aacaacttaaaaagtccaacattcattacaaataataatacagcatgtgatctcccaccaagtctaaatggaactcgctgtttacttgatcttctcacca |
593 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
298382 |
aacaacttaaaaagtccaacattcattacaaataataatacagcatgtgatctcccaccaagtctaaatggaactcgctgtttacttgatcttctcacca |
298283 |
T |
|
| Q |
594 |
ttgacgtcaaaaaagacatcctttgcnnnnnnntgcgtacatctataagcagaggcagtagaaactagagcttgttcatcaggagattcttcctggtaaa |
693 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
298282 |
ttgacgtcaaaaaagacatcctttgctaaaaaatgcgtacatctataagcagaggcagtagaaactagagcttgtttatcaggagattcttcctggtaaa |
298183 |
T |
|
| Q |
694 |
caatactttctatatcttcatttgattcg |
722 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
298182 |
caatactttctatatcttcatttgattcg |
298154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 100 - 382
Target Start/End: Complemental strand, 301034 - 300752
Alignment:
| Q |
100 |
ccctcttgcagcttgtcctctcaactctagttgctccaagtaggtttggtttgcattctacatgtgctgttctttgacgtagttttgtagctcggtcaat |
199 |
Q |
| |
|
|||||||||| ||||||||| ||||| |||||| |||||||||||| ||||| |||||||| | ||| ||||| ||||||||| || | ||| ||| |
|
|
| T |
301034 |
ccctcttgcatcttgtcctc--aactccagttgccccaagtaggtttagtttgaattctacaagcgcttccttttgaggtagttttgcagtttggttaat |
300937 |
T |
|
| Q |
200 |
caatgaagttccggcctcttcatacatgctttgccaatccttaaattctgcatctgaaagatcacttgaggcaattacaagagtccttaaaccttg-gaa |
298 |
Q |
| |
|
||||||||| | |||||||||| ||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||| || |
|
|
| T |
300936 |
caatgaagtgcttccctcttcataaatgctttgccaatccttaaattctgcatccgaaagttcccttgaggcaattacaagagtccttaaaccttgcaaa |
300837 |
T |
|
| Q |
299 |
gaatattcactcaaatg-attctgagttggatgcttaattcaaatgttgcttgcatagtcatttgctaaaatgctaaactttgaa |
382 |
Q |
| |
|
|||||||||||||||| || ||||||||| ||||||| | |||||||||| |||||||||| ||||||||||||||| ||||| |
|
|
| T |
300836 |
taatattcactcaaatgaatgttgagttggaggcttaatgctaatgttgcttacatagtcattagctaaaatgctaaacattgaa |
300752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 52
Target Start/End: Complemental strand, 301067 - 301033
Alignment:
| Q |
18 |
agaccaattgaaattgcagtctctagcttatcacc |
52 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
301067 |
agaccaattgaaattgcagtctctagcttatcacc |
301033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 5e-27; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 51 - 331
Target Start/End: Original strand, 27465478 - 27465757
Alignment:
| Q |
51 |
ccagaccttaattccagctaaccgtagagactcaatggcttctgtttctccctcttgcagcttgtcctctcaactctagttgctccaagtaggtttggtt |
150 |
Q |
| |
|
||||||||| ||||||||| |||||| |||||||||||||||| | | ||||||||||||||||| ||||| || ||||||||||||||| ||| | |
|
|
| T |
27465478 |
ccagaccttgattccagcttgccgtagggactcaatggcttctggtacaccctcttgcagcttgtc--ctcaattccagttgctccaagtagatttaaat |
27465575 |
T |
|
| Q |
151 |
tgcattctacatgtgctgttctttgacgtagttttgtagctcggtcaatcaatgaagttccggcctcttcatacatgctttgccaatccttaaattctgc |
250 |
Q |
| |
|
||||||||| | | |||| | ||||||||||||| | |||| |||| | || | ||| | |||||| ||||| || ||||||| ||| || ||| || |
|
|
| T |
27465576 |
tgcattctataagagctgctgtttgacgtagtttactggctctgtcagttaacgcagtgcttgcctctccatacctgttttgccactccacaagttcagc |
27465675 |
T |
|
| Q |
251 |
atctgaaagatcacttgaggcaattacaagagtccttaaaccttg-gaagaatattcactcaaatgattctgagttggatgc |
331 |
Q |
| |
|
||| |||||| || ||||||| |||||| || | |||||||| ||||||||||||| ||||||| ||||||||| |||| |
|
|
| T |
27465676 |
atcagaaagacttctagaggcaactacaagggtgcgcaaaccttgtgaagaatattcacacaaatgactctgagttgcatgc |
27465757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 642 - 697
Target Start/End: Original strand, 27466156 - 27466211
Alignment:
| Q |
642 |
gcagaggcagtagaaactagagcttgttcatcaggagattcttcctggtaaacaat |
697 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||| |||||| |||||||| |||| |
|
|
| T |
27466156 |
gcagaggccgcagaaactagagcttgttcatcaggggattctccctggtaatcaat |
27466211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University