View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13970_low_10 (Length: 387)

Name: NF13970_low_10
Description: NF13970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13970_low_10
NF13970_low_10
[»] chr4 (8 HSPs)
chr4 (18-374)||(24153524-24153880)
chr4 (212-374)||(50723047-50723209)
chr4 (230-372)||(4377498-4377652)
chr4 (212-300)||(2815772-2815860)
chr4 (212-300)||(36248071-36248159)
chr4 (230-294)||(2158847-2158911)
chr4 (230-300)||(33518292-33518362)
chr4 (296-349)||(2815867-2815920)
[»] chr1 (11 HSPs)
chr1 (212-374)||(9539358-9539520)
chr1 (212-372)||(10780916-10781076)
chr1 (212-372)||(6226881-6227052)
chr1 (230-300)||(25031162-25031232)
chr1 (232-290)||(8065199-8065257)
chr1 (230-362)||(1016758-1016901)
chr1 (212-297)||(34912509-34912594)
chr1 (235-295)||(31738109-31738169)
chr1 (230-300)||(27464077-27464147)
chr1 (309-372)||(9477932-9477995)
chr1 (258-300)||(9477870-9477912)
[»] chr3 (12 HSPs)
chr3 (212-372)||(26285568-26285728)
chr3 (212-300)||(38573175-38573263)
chr3 (232-372)||(23778476-23778625)
chr3 (230-362)||(26903367-26903510)
chr3 (230-362)||(36617530-36617673)
chr3 (296-372)||(36477778-36477854)
chr3 (233-300)||(24310096-24310163)
chr3 (230-300)||(25032075-25032145)
chr3 (296-372)||(7728795-7728871)
chr3 (212-300)||(7856697-7856785)
chr3 (235-295)||(35502350-35502410)
chr3 (233-301)||(36475688-36475756)
[»] chr5 (5 HSPs)
chr5 (212-374)||(43144762-43144935)
chr5 (233-372)||(36745159-36745309)
chr5 (233-295)||(5569180-5569242)
chr5 (260-301)||(36633808-36633849)
chr5 (296-375)||(25819371-25819450)
[»] chr7 (15 HSPs)
chr7 (221-378)||(33941367-33941535)
chr7 (230-300)||(38300194-38300264)
chr7 (212-375)||(2945127-2945301)
chr7 (230-300)||(8256765-8256835)
chr7 (296-374)||(30074373-30074451)
chr7 (296-362)||(43265687-43265753)
chr7 (227-300)||(24658636-24658709)
chr7 (240-300)||(1247850-1247910)
chr7 (296-370)||(10702848-10702922)
chr7 (233-295)||(25233168-25233230)
chr7 (231-300)||(46090010-46090079)
chr7 (221-297)||(1691857-1691933)
chr7 (239-301)||(25617885-25617947)
chr7 (230-300)||(43265760-43265830)
chr7 (296-372)||(38293551-38293627)
[»] chr2 (8 HSPs)
chr2 (230-374)||(32033191-32033344)
chr2 (230-362)||(4075659-4075801)
chr2 (296-362)||(4075860-4075926)
chr2 (237-299)||(3356913-3356975)
chr2 (218-295)||(18703482-18703559)
chr2 (230-300)||(11562222-11562292)
chr2 (232-281)||(7700561-7700610)
chr2 (296-374)||(3356827-3356905)
[»] chr6 (6 HSPs)
chr6 (230-363)||(24901898-24902042)
chr6 (212-297)||(2919863-2919948)
chr6 (230-362)||(18817129-18817272)
chr6 (212-300)||(6689395-6689483)
chr6 (212-300)||(21883456-21883544)
chr6 (212-295)||(14607587-14607670)
[»] scaffold0535 (1 HSPs)
scaffold0535 (234-295)||(9895-9956)
[»] chr8 (8 HSPs)
chr8 (230-362)||(45485948-45486091)
chr8 (221-300)||(24556723-24556802)
chr8 (314-374)||(6802494-6802554)
chr8 (314-374)||(32161126-32161186)
chr8 (212-374)||(2148580-2148753)
chr8 (221-299)||(6802580-6802658)
chr8 (309-374)||(24556638-24556703)
chr8 (211-300)||(29866363-29866452)


Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 18 - 374
Target Start/End: Original strand, 24153524 - 24153880
Alignment:
Q  18 gtatcgtggttgatttaaaccttatagatcacaacaatgactccatttaccatcctaaactttcaatcttatctcaatacatcatctcgtgaagcctaca 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||     
T  24153524 gtatcgtggttgatttaaaccttatagatcacaacaatgactccattttccatcctaaactttcaatcttatctcaataaatcatctcgtgaagcctacg 24153623  T
Q  118 gtgcacttgtaaacacaaattaaaatggaaaacctgtaaacatgagaagttgttatttagagattcaaagtttgggaagtagaacactaaatgaaacatt 217  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  24153624 gtgcacttgtaaacacaaattaaaatggaaaaccagtaaacatgagaagttgttatttagagattcaaagtttgggaaatagaacactaaatgaaacatt 24153723  T
Q  218 tgtagtttctatcggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaaagatttggaagcacttt 317  Q
    ||||||| ||| || |||||||||||||||||||||||||||||||||||||  |||||||||||| ||||||||||||| |||||||||||||| ||||    
T  24153724 tgtagttgctaccgccaagagcaaagtcaacttcacatgcttataaactatagtaaatgtgttgcacttatttgtttccataaagatttggaagcccttt 24153823  T
Q  318 caactttgcaaattttggatcagattgaacatttttagcataattcataagttgatg 374  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24153824 caactttgcaaattttggatcagattgaacatttttagcataattcataagttgatg 24153880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 212 - 374
Target Start/End: Complemental strand, 50723209 - 50723047
Alignment:
Q  212 aacatttgtagtttctatcggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaaagatttggaag 311  Q
    |||| ||| |||| ||| ||||||||| ||||||||||||| | | | |||||| | | |||||||||||||||||||||||| ||||||||| |  |||    
T  50723209 aacacttgcagttgctaccggcaagagtaaagtcaacttcaaaagttaataaaccacagcaaatgtgttgcatttatttgttttcacaaagatcttaaag 50723110  T
Q  312 cactttcaactttgcaaattttggatcagattgaacatttttagcataattcataagttgatg 374  Q
      |||||||||| ||||||||||| ||| ||||||||||| || |||||| | ||||||||||    
T  50723109 tcctttcaacttagcaaattttgggtcaaattgaacatttgtaacataatacttaagttgatg 50723047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 230 - 372
Target Start/End: Original strand, 4377498 - 4377652
Alignment:
Q  230 cggcaagagcaaagtcaacttcacatgcttataaact-ataacaaatgtgttgcatttatttgtttc-----------cacaaagatttggaagcacttt 317  Q
    ||||||||||||||||||||||| | | ||||||| | ||| ||||||||||||| |||||||||||           ||||||||| || |||| ||||    
T  4377498 cggcaagagcaaagtcaacttcaaaagtttataaaatcatagcaaatgtgttgcacttatttgtttccacaagtcatgcacaaagatctgaaagcccttt 4377597  T
Q  318 caactttgcaaattttggatcagattgaacatttttagcataattcataagttga 372  Q
    |||||| ||||||||||| |||||| |||||| | || |||||||| ||||||||    
T  4377598 caacttggcaaattttgggtcagatcgaacatctgtaacataattcttaagttga 4377652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 212 - 300
Target Start/End: Original strand, 2815772 - 2815860
Alignment:
Q  212 aacatttgtagtttctatcggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa 300  Q
    |||| ||| |||| ||| |||||||||||||| |||||| | | | |||||||| ||| ||||||||||||| ||||||||||||||||    
T  2815772 aacacttgcagttgctaccggcaagagcaaagccaacttgaaaagtttataaaccatagcaaatgtgttgcacttatttgtttccacaa 2815860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 212 - 300
Target Start/End: Original strand, 36248071 - 36248159
Alignment:
Q  212 aacatttgtagtttctatcggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa 300  Q
    |||| ||| |||| ||| |||||||||||||| |||||||| | | |||||||  |||||||| |||||||| ||||||||||||||||    
T  36248071 aacacttgcagttgctaccggcaagagcaaagccaacttcaaaagtttataaatcataacaaaagtgttgcacttatttgtttccacaa 36248159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 294
Target Start/End: Original strand, 2158847 - 2158911
Alignment:
Q  230 cggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgttt 294  Q
    |||||||||||||  |||||||| | ||||| |||| ||| ||||||||||||| ||||||||||    
T  2158847 cggcaagagcaaaaccaacttcaaaagcttacaaaccatagcaaatgtgttgcacttatttgttt 2158911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 300
Target Start/End: Original strand, 33518292 - 33518362
Alignment:
Q  230 cggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa 300  Q
    ||||||||| |||| |||||| | | | |||||||| |  |||||||||||||| ||||||||||||||||    
T  33518292 cggcaagagtaaagccaactttaaaagtttataaaccacgacaaatgtgttgcacttatttgtttccacaa 33518362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 349
Target Start/End: Original strand, 2815867 - 2815920
Alignment:
Q  296 cacaaagatttggaagcactttcaactttgcaaattttggatcagattgaacat 349  Q
    ||||||||| || |||| |||||||||| ||||||||||| |||||| ||||||    
T  2815867 cacaaagatctgaaagccctttcaacttagcaaattttgggtcagatcgaacat 2815920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 87; Significance: 1e-41; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 212 - 374
Target Start/End: Complemental strand, 9539520 - 9539358
Alignment:
Q  212 aacatttgtagtttctatcggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaaagatttggaag 311  Q
    |||| ||| |||| |||||||||||||||||  |||||||| | | |||||||| | ||||||||||||||| |||||||||||||||||||| ||||||    
T  9539520 aacacttgcagttgctatcggcaagagcaaaaccaacttcaaaagtttataaaccaaaacaaatgtgttgcacttatttgtttccacaaagatctggaag 9539421  T
Q  312 cactttcaactttgcaaattttggatcagattgaacatttttagcataattcataagttgatg 374  Q
    | | |||||||| |||||||||||||||||| |||||||| || |||||||| ||||||||||    
T  9539420 ccccttcaacttagcaaattttggatcagatcgaacatttgtaacataattcttaagttgatg 9539358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 212 - 372
Target Start/End: Complemental strand, 10781076 - 10780916
Alignment:
Q  212 aacatttgtagtttctatcggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaaagatttggaag 311  Q
    |||| ||| |||| ||| |||||||||||||  |||||||| | | ||||||||||||  |||||||||||| |||||||||||||||||||| || |||    
T  10781076 aacacttgcagttgctaccggcaagagcaaaaccaacttcaaaagtttataaactatagtaaatgtgttgcacttatttgtttccacaaagatctgaaag 10780977  T
Q  312 cactttcaactttgcaaattttggatcagattgaacatttttagcataattcataagttga 372  Q
      |||||||||| ||||||||| | |||||| |||||| | || |||||||  ||||||||    
T  10780976 tcctttcaacttagcaaattttaggtcagatcgaacatatgtaacataattattaagttga 10780916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 212 - 372
Target Start/End: Original strand, 6226881 - 6227052
Alignment:
Q  212 aacatttgtagtttctatcggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttc-----------cacaa 300  Q
    |||| ||| |||| ||||||||||||||||||||||||||| | | |||||||| ||| ||||||||||||| |||||||||||           |||||    
T  6226881 aacacttgcagttgctatcggcaagagcaaagtcaacttcaaaagtttataaaccatagcaaatgtgttgcacttatttgtttccacaagttttgcacaa 6226980  T
Q  301 agatttggaagcactttcaactttgcaaattttggatcagattgaacatttttagcataattcataagttga 372  Q
    |||| || |||| ||| ||||||  ||| |||||| |||||| ||||||||||| |||||||| ||||||||    
T  6226981 agatctgaaagcccttacaacttaacaacttttgggtcagatcgaacatttttaacataattcttaagttga 6227052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 230 - 300
Target Start/End: Original strand, 25031162 - 25031232
Alignment:
Q  230 cggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa 300  Q
    ||||||||||||||||||||||| | | |||||||| ||| ||||||||||||||||||||||||||||||    
T  25031162 cggcaagagcaaagtcaacttcaaaagtttataaaccatagcaaatgtgttgcatttatttgtttccacaa 25031232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 232 - 290
Target Start/End: Original strand, 8065199 - 8065257
Alignment:
Q  232 gcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttattt 290  Q
    |||||||||||| |||||||| | | |||||||| ||||||||||||||||||||||||    
T  8065199 gcaagagcaaagccaacttcaaaagtttataaaccataacaaatgtgttgcatttattt 8065257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 362
Target Start/End: Complemental strand, 1016901 - 1016758
Alignment:
Q  230 cggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa-----------agatttggaagcactttc 318  Q
    |||||||||||||| |||||||| | ||||| |||| | | ||||||| ||||| ||||||||||||||||           ||||  | |||| |||||    
T  1016901 cggcaagagcaaagccaacttcaaaagcttaaaaaccaaagcaaatgtcttgcacttatttgtttccacaagtattgcacaaagatccgaaagccctttc 1016802  T
Q  319 aactttgcaaattttggatcagattgaacatttttagcataatt 362  Q
    ||||||| ||||||||||||||||| ||||||| || |||||||    
T  1016801 aactttgaaaattttggatcagatttaacatttctaacataatt 1016758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 297
Target Start/End: Original strand, 34912509 - 34912594
Alignment:
Q  212 aacatttgtagtttctatcggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttcca 297  Q
    |||| ||| |||| |||||||||||  ||||| |||||||| | ||||||||||||||   ||||||||||| |||||||||||||    
T  34912509 aacacttgcagttactatcggcaaggacaaagccaacttcaaaagcttataaactatagtgaatgtgttgcacttatttgtttcca 34912594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 235 - 295
Target Start/End: Original strand, 31738109 - 31738169
Alignment:
Q  235 agagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttc 295  Q
    |||||||||||||||| | |  ||||||||  |||||||||||||||||||||||||||||    
T  31738109 agagcaaagtcaactttaaaaacttataaatcataacaaatgtgttgcatttatttgtttc 31738169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 300
Target Start/End: Complemental strand, 27464147 - 27464077
Alignment:
Q  230 cggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa 300  Q
    |||| ||| ||||| |||||||| | |||||||||  ||||||||||| ||||| ||||||||||||||||    
T  27464147 cggctagaacaaagccaacttcaaaagcttataaatcataacaaatgtattgcacttatttgtttccacaa 27464077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 309 - 372
Target Start/End: Original strand, 9477932 - 9477995
Alignment:
Q  309 aagcactttcaactttgcaaattttggatcagattgaacatttttagcataattcataagttga 372  Q
    |||| |||||||||| ||||||||||| | |||| |||||||| || |||||||| ||||||||    
T  9477932 aagccctttcaacttagcaaattttgggttagatcgaacatttgtaccataattcttaagttga 9477995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 300
Target Start/End: Original strand, 9477870 - 9477912
Alignment:
Q  258 ttataaactataacaaatgtgttgcatttatttgtttccacaa 300  Q
    |||||||| ||| ||||||||||||| ||||||||||||||||    
T  9477870 ttataaaccatagcaaatgtgttgcacttatttgtttccacaa 9477912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 212 - 372
Target Start/End: Complemental strand, 26285728 - 26285568
Alignment:
Q  212 aacatttgtagtttctatcggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaaagatttggaag 311  Q
    |||| |||||||| ||| ||| ||||||||||||||||||| | |||||||||| |||| |||| ||||||| |||||||||||||||| ||| || |||    
T  26285728 aacacttgtagttgctaacggaaagagcaaagtcaacttcaaaagcttataaaccataataaatttgttgcacttatttgtttccacaacgatctgaaag 26285629  T
Q  312 cactttcaactttgcaaattttggatcagattgaacatttttagcataattcataagttga 372  Q
    | |||||||||| | ||||||| | |||||| ||| |||| || |||||||  ||||||||    
T  26285628 ccctttcaacttagtaaatttttggtcagatcgaaaatttgtaacataattattaagttga 26285568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 212 - 300
Target Start/End: Original strand, 38573175 - 38573263
Alignment:
Q  212 aacatttgtagtttctatcggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa 300  Q
    |||| ||| |||| |||||||||||||||||| |||||||| | | |||||||| ||| ||||||||||||| ||||||||||||||||    
T  38573175 aacacttgcagttgctatcggcaagagcaaagccaacttcaaaagtttataaacaatagcaaatgtgttgcacttatttgtttccacaa 38573263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 232 - 372
Target Start/End: Original strand, 23778476 - 23778625
Alignment:
Q  232 gcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttc---------cacaaagatttggaagcactttcaact 322  Q
    |||||||||||| |||||||| | | |||||||| ||| |||||||||||||||||||||||||         ||||||||| |  |||| |||||||||    
T  23778476 gcaagagcaaagccaacttcaaaagtttataaaccatagcaaatgtgttgcatttatttgtttccacaagtttcacaaagatcttaaagccctttcaact 23778575  T
Q  323 ttgcaaattttggatcagattgaacatttttagcataattcataagttga 372  Q
    |  |||||||||| |||||| ||||||||  | |||||||| ||||||||    
T  23778576 taacaaattttgggtcagatcgaacatttgcaacataattcttaagttga 23778625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 230 - 362
Target Start/End: Original strand, 26903367 - 26903510
Alignment:
Q  230 cggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa-----------agatttggaagcactttc 318  Q
    |||||||||||||| |||||||| | ||||| |||| | | ||||||| ||||| ||||||||||||||||           ||||  | |||| |||||    
T  26903367 cggcaagagcaaagccaacttcaaaagcttaaaaaccaaagcaaatgtcttgcacttatttgtttccacaagtattgcacaaagatccgaaagccctttc 26903466  T
Q  319 aactttgcaaattttggatcagattgaacatttttagcataatt 362  Q
    ||||||||||||||||||||||||| ||||||| || |||||||    
T  26903467 aactttgcaaattttggatcagatttaacatttctaacataatt 26903510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 230 - 362
Target Start/End: Complemental strand, 36617673 - 36617530
Alignment:
Q  230 cggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa-----------agatttggaagcactttc 318  Q
    |||||||||||||| |||||||| | ||||| |||| | | ||||||| ||||| ||||||||||||||||           ||||  | |||| |||||    
T  36617673 cggcaagagcaaagccaacttcaaaagcttaaaaaccaaagcaaatgtcttgcacttatttgtttccacaagtattgcacaaagatccgaaagccctttc 36617574  T
Q  319 aactttgcaaattttggatcagattgaacatttttagcataatt 362  Q
    ||||||||||||||||||||||||| ||||||| || |||||||    
T  36617573 aactttgcaaattttggatcagatttaacatttctaacataatt 36617530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 296 - 372
Target Start/End: Complemental strand, 36477854 - 36477778
Alignment:
Q  296 cacaaagatttggaagcactttcaactttgcaaattttggatcagattgaacatttttagcataattcataagttga 372  Q
    ||||||||| || |||| |||||||||| ||||||||||| |||||| |||||||| || |||||||| ||||||||    
T  36477854 cacaaagatatgaaagccctttcaacttagcaaattttgggtcagatcgaacatttgtaacataattcttaagttga 36477778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 233 - 300
Target Start/End: Original strand, 24310096 - 24310163
Alignment:
Q  233 caagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa 300  Q
    |||||||||||||||||||| | | |||||||| ||| ||||||||| ||| ||||||||||||||||    
T  24310096 caagagcaaagtcaacttcaaaagtttataaaccatagcaaatgtgtcgcacttatttgtttccacaa 24310163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 230 - 300
Target Start/End: Complemental strand, 25032145 - 25032075
Alignment:
Q  230 cggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa 300  Q
    |||||||||||||  |||||||| | | | |||||| |||| |||||||||||||||||||||||||||||    
T  25032145 cggcaagagcaaaaccaacttcaaaagttaataaaccataataaatgtgttgcatttatttgtttccacaa 25032075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 372
Target Start/End: Complemental strand, 7728871 - 7728795
Alignment:
Q  296 cacaaagatttggaagcactttcaactttgcaaattttggatcagattgaacatttttagcataattcataagttga 372  Q
    ||||||||| || || | |||||||||| ||||||||||| ||||||  ||||||| || |||||||| ||||||||    
T  7728871 cacaaagatctgaaaaccctttcaacttagcaaattttgggtcagatataacatttgtaacataattcttaagttga 7728795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 300
Target Start/End: Original strand, 7856697 - 7856785
Alignment:
Q  212 aacatttgtagtttctatcggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa 300  Q
    |||| ||| |||| ||| |||||| ||||||| |||||||| | | |||||||| |||  ||| |||||||| ||||||||||||||||    
T  7856697 aacacttgcagttgctaccggcaaaagcaaagccaacttcaaaagtttataaaccataggaaacgtgttgcacttatttgtttccacaa 7856785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 295
Target Start/End: Complemental strand, 35502410 - 35502350
Alignment:
Q  235 agagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttc 295  Q
    |||||||| ||||||||| | |||||||||  |||||||||| |||||| |||||||||||    
T  35502410 agagcaaaatcaacttcaaaagcttataaatcataacaaatgggttgcacttatttgtttc 35502350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 301
Target Start/End: Original strand, 36475688 - 36475756
Alignment:
Q  233 caagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaaa 301  Q
    |||||| |||| |||||| | | |||| ||||  ||||||||||||||||| || ||||||||||||||    
T  36475688 caagagaaaagccaacttaaaaggcttctaaatcataacaaatgtgttgcacttgtttgtttccacaaa 36475756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 212 - 374
Target Start/End: Original strand, 43144762 - 43144935
Alignment:
Q  212 aacatttgtagtttctatcggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttc-----------cacaa 300  Q
    |||| ||| |||| ||| ||||||||||||||||||||||| | | |||||||| ||| |||||||||| ||||||||||||||           |||||    
T  43144762 aacacttgcagttgctaccggcaagagcaaagtcaacttcaaaagtttataaaccatagcaaatgtgttacatttatttgtttccacaagttttgcacaa 43144861  T
Q  301 agatttggaagcactttcaactttgcaaattttggatcagattgaacatttttagcataattcataagttgatg 374  Q
    ||||||| || | |||||||||| ||||||||| | |||||| |||||||| ||  ||||||| ||||||||||    
T  43144862 agatttgaaaactctttcaacttagcaaattttcggtcagatcgaacatttgtaatataattcttaagttgatg 43144935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 233 - 372
Target Start/End: Original strand, 36745159 - 36745309
Alignment:
Q  233 caagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttg-----------tttccacaaagatttggaagcactttcaac 321  Q
    |||||||||||||||||||| | | |||||||| ||| ||||||||||||| |||| ||           ||| ||||||||| || |||| ||||||||    
T  36745159 caagagcaaagtcaacttcaaaagtttataaaccatatcaaatgtgttgcacttatatgttttcataatttttgcacaaagatctgaaagccctttcaac 36745258  T
Q  322 tttgcaaattttggatcagattgaacatttttagcataattcataagttga 372  Q
    || ||||| ||||| |||||| |||||||| || |||||||| ||||||||    
T  36745259 ttagcaaactttgggtcagatcgaacatttgtaacataattcttaagttga 36745309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 295
Target Start/End: Original strand, 5569180 - 5569242
Alignment:
Q  233 caagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttc 295  Q
    |||||||||||||||||||| | ||| |||||  ||||||||||||||||| |||||| ||||    
T  5569180 caagagcaaagtcaacttcaaaagctaataaatcataacaaatgtgttgcacttatttatttc 5569242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 260 - 301
Target Start/End: Complemental strand, 36633849 - 36633808
Alignment:
Q  260 ataaactataacaaatgtgttgcatttatttgtttccacaaa 301  Q
    |||||| ||| |||||||||||||||||||||||||||||||    
T  36633849 ataaaccatagcaaatgtgttgcatttatttgtttccacaaa 36633808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 296 - 375
Target Start/End: Original strand, 25819371 - 25819450
Alignment:
Q  296 cacaaagatttggaagcactttcaactttgcaaattttggatcagattgaacatttttagcataattcataagttgatga 375  Q
    ||||||||||||||  | |||| ||||| ||||||||||||||||||| |||||||  | ||| |||  |||||||||||    
T  25819371 cacaaagatttggattcccttttaacttagcaaattttggatcagatttaacatttacaacattatttctaagttgatga 25819450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 221 - 378
Target Start/End: Complemental strand, 33941535 - 33941367
Alignment:
Q  221 agtttctatcggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa-----------agatttgga 309  Q
    |||| ||| |||||||||||||  |||||||| | | |||||| | ||| ||||||||||||| ||||||||||||||||           |||| || |    
T  33941535 agttgctaccggcaagagcaaatccaacttcaaaagtttataatccatagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaa 33941436  T
Q  310 agcactttcaactttgcaaattttggatcagattgaacatttttagcataattcataagttgatgatgt 378  Q
    ||| |||||||||| ||||||||||| |||||| |||||||| || |||||||| |||||||| |||||    
T  33941435 agccctttcaacttagcaaattttgggtcagatcgaacatttataacataattcttaagttgacgatgt 33941367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 230 - 300
Target Start/End: Complemental strand, 38300264 - 38300194
Alignment:
Q  230 cggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa 300  Q
    ||||||||||||||||||||||| | | |||||||| ||| ||||||||||||| ||||||||||||||||    
T  38300264 cggcaagagcaaagtcaacttcaaaagtttataaaccatagcaaatgtgttgcacttatttgtttccacaa 38300194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 212 - 375
Target Start/End: Complemental strand, 2945301 - 2945127
Alignment:
Q  212 aacatttgtagtttctatcggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttcc-----------acaa 300  Q
    |||| ||| |||| ||| || |||||||||||||||||||| | | |||||||  ||| ||||||||||||||||||||| ||||           ||||    
T  2945301 aacacttgcagttgctaccgacaagagcaaagtcaacttcaaaagtttataaatcatagcaaatgtgttgcatttatttgcttccacaagttttgtacaa 2945202  T
Q  301 agatttggaagcactttcaactttgcaaattttggatcagattgaacatttttagcataattcataagttgatga 375  Q
    |||| || |||| |||||||||| ||||||||| | |||||| |||||||| ||  ||||||| |||||||||||    
T  2945201 agatctgaaagccctttcaacttagcaaattttcggtcagatcgaacatttgtaatataattcttaagttgatga 2945127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 230 - 300
Target Start/End: Original strand, 8256765 - 8256835
Alignment:
Q  230 cggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa 300  Q
    ||||||||||||| ||||||||| | |||||||||| ||| |||||||| |||| |||||| |||||||||    
T  8256765 cggcaagagcaaaatcaacttcaaaagcttataaacaatagcaaatgtgctgcacttatttatttccacaa 8256835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 296 - 374
Target Start/End: Complemental strand, 30074451 - 30074373
Alignment:
Q  296 cacaaagatttggaagcactttcaactttgcaaattttggatcagattgaacatttttagcataattcataagttgatg 374  Q
    |||||||||||| |||| |||||||||| ||||||||| | |||||| |||||||| ||  ||||||| ||||||||||    
T  30074451 cacaaagatttgaaagccctttcaacttagcaaattttcgttcagatcgaacatttgtaatataattcttaagttgatg 30074373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 296 - 362
Target Start/End: Complemental strand, 43265753 - 43265687
Alignment:
Q  296 cacaaagatttggaagcactttcaactttgcaaattttggatcagattgaacatttttagcataatt 362  Q
    |||||||||  | |||| |||||||||||||||||||||||||||||| ||||||| || |||||||    
T  43265753 cacaaagatccgaaagccctttcaactttgcaaattttggatcagatttaacatttctaacataatt 43265687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 300
Target Start/End: Original strand, 24658636 - 24658709
Alignment:
Q  227 tatcggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa 300  Q
    ||||||||||||||||  |||||||| | | |||||||  ||| ||||||||||||| ||||||||||||||||    
T  24658636 tatcggcaagagcaaaaccaacttcaaaagtttataaatcatagcaaatgtgttgcacttatttgtttccacaa 24658709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 240 - 300
Target Start/End: Complemental strand, 1247910 - 1247850
Alignment:
Q  240 aaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa 300  Q
    ||||||||||||| | |||||||||  ||| ||||||||||||| ||||||||||||||||    
T  1247910 aaagtcaacttcaaaagcttataaatcatagcaaatgtgttgcacttatttgtttccacaa 1247850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 370
Target Start/End: Original strand, 10702848 - 10702922
Alignment:
Q  296 cacaaagatttggaagcactttcaactttgcaaattttggatcagattgaacatttttagcataattcataagtt 370  Q
    ||||||||| || ||||  ||||||||| ||||||||||| |||||| |||||||| || |||||||| ||||||    
T  10702848 cacaaagatctgaaagccttttcaacttagcaaattttgggtcagatagaacatttgtaacataattcttaagtt 10702922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 295
Target Start/End: Original strand, 25233168 - 25233230
Alignment:
Q  233 caagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttc 295  Q
    ||||||||||| ||| |||| | |||||||||  ||||||||||||||||| |||||||||||    
T  25233168 caagagcaaagccaatttcaaaagcttataaatcataacaaatgtgttgcacttatttgtttc 25233230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 231 - 300
Target Start/End: Complemental strand, 46090079 - 46090010
Alignment:
Q  231 ggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa 300  Q
    ||||||||||||| | |||||  | |||||||||| ||| ||||||||||||| |||||||||| |||||    
T  46090079 ggcaagagcaaagccgacttccaaagcttataaaccatagcaaatgtgttgcacttatttgttttcacaa 46090010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 297
Target Start/End: Original strand, 1691857 - 1691933
Alignment:
Q  221 agtttctatcggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttcca 297  Q
    |||| |||| |||| |||||||  |||||||| | | |||||||| ||| ||||||||||||| |||||||||||||    
T  1691857 agttgctattggcatgagcaaaaccaacttcaaaagtttataaaccatagcaaatgtgttgcacttatttgtttcca 1691933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 301
Target Start/End: Original strand, 25617885 - 25617947
Alignment:
Q  239 caaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaaa 301  Q
    |||| ||||||||| | |||||||||  ||| |||||||||| |||||||||||||| |||||    
T  25617885 caaaatcaacttcaaaagcttataaatcatagcaaatgtgttacatttatttgtttcaacaaa 25617947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 300
Target Start/End: Complemental strand, 43265830 - 43265760
Alignment:
Q  230 cggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa 300  Q
    |||||||||||||| |||||||| | ||||| |||| | | ||| ||| ||||| ||||||||||||||||    
T  43265830 cggcaagagcaaagccaacttcaaaagcttaaaaaccaaagcaagtgtcttgcacttatttgtttccacaa 43265760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 372
Target Start/End: Complemental strand, 38293627 - 38293551
Alignment:
Q  296 cacaaagatttggaagcactttcaactttgcaaattttggatcagattgaacatttttagcataattcataagttga 372  Q
    |||||| || || |||| ||| ||||||  ||| |||||| ||||||||||||||| || |||||||| ||||||||    
T  38293627 cacaaaaatctgaaagcccttacaacttaacaacttttgggtcagattgaacatttgtaacataattcttaagttga 38293551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 230 - 374
Target Start/End: Original strand, 32033191 - 32033344
Alignment:
Q  230 cggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttcca---------caaagatttggaagcactttcaa 320  Q
    |||||||||||||  |||||||| | | |||||||  ||| |||||||||||||||||||||||||||         |||||| ||  |||| |||||||    
T  32033191 cggcaagagcaaaaccaacttcaaaagtttataaatcatagcaaatgtgttgcatttatttgtttccacaagttttgcaaagacttctaagccctttcaa 32033290  T
Q  321 ctttgcaaattttggatcagattgaacatttttagcataattcataagttgatg 374  Q
    ||| ||||||||||| || ||| |||||||| || |||||||| ||||||||||    
T  32033291 cttagcaaattttgggtcggatcgaacatttataacataattcttaagttgatg 32033344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 230 - 362
Target Start/End: Original strand, 4075659 - 4075801
Alignment:
Q  230 cggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaaagattt----------ggaagcactttca 319  Q
    |||||||||||||| |||||||| | ||||| |||| | | ||||||| ||||| ||||||||||||||||  |||           |||||| ||||||    
T  4075659 cggcaagagcaaagccaacttcaaaagcttaaaaaccaaagcaaatgtcttgcacttatttgtttccacaagtattgcacaaagatcggaagccctttca 4075758  T
Q  320 actttgcaaattttggatcagattgaacatttttagcataatt 362  Q
    |||||||||||||||||||||||| ||||||| || |||||||    
T  4075759 actttgcaaattttggatcagatttaacatttctaacataatt 4075801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 296 - 362
Target Start/End: Original strand, 4075860 - 4075926
Alignment:
Q  296 cacaaagatttggaagcactttcaactttgcaaattttggatcagattgaacatttttagcataatt 362  Q
    |||||||||| | |||| |||||||||||||||||||||||||||||| ||||||| || |||||||    
T  4075860 cacaaagattcgaaagccctttcaactttgcaaattttggatcagatttaacatttctaacataatt 4075926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 237 - 299
Target Start/End: Complemental strand, 3356975 - 3356913
Alignment:
Q  237 agcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccaca 299  Q
    |||||||||||||||| | | |||||||  ||| |||||||||||||||||||||||||||||    
T  3356975 agcaaagtcaacttcaaaagtttataaatcatagcaaatgtgttgcatttatttgtttccaca 3356913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 218 - 295
Target Start/End: Complemental strand, 18703559 - 18703482
Alignment:
Q  218 tgtagtttctatcggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttc 295  Q
    ||||||| |||| ||||||||||||| |||||||| | |||||||||| ||| ||||| |||| || |||||||||||    
T  18703559 tgtagttgctataggcaagagcaaagccaacttcaaaagcttataaaccatatcaaatatgtttcacttatttgtttc 18703482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 300
Target Start/End: Original strand, 11562222 - 11562292
Alignment:
Q  230 cggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa 300  Q
    ||||||||| |||| ||||||||   | | |||||||||| ||||| ||||||||||||||||||||||||    
T  11562222 cggcaagagtaaagccaacttcaatagttaataaactatagcaaatatgttgcatttatttgtttccacaa 11562292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 232 - 281
Target Start/End: Original strand, 7700561 - 7700610
Alignment:
Q  232 gcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttg 281  Q
    ||||||||||||||||| ||| | |||||||||| |||||||||||||||    
T  7700561 gcaagagcaaagtcaacgtcaaaagcttataaaccataacaaatgtgttg 7700610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 374
Target Start/End: Complemental strand, 3356905 - 3356827
Alignment:
Q  296 cacaaagatttggaagcactttcaactttgcaaattttggatcagattgaacatttttagcataattcataagttgatg 374  Q
    ||||||||| || |||| ||||||||||  |||||||| | ||||||  ||||||| ||  ||||||||||||||||||    
T  3356905 cacaaagatatgaaagccctttcaacttaacaaattttcggtcagatcaaacatttataatataattcataagttgatg 3356827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 230 - 363
Target Start/End: Original strand, 24901898 - 24902042
Alignment:
Q  230 cggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa-----------agatttggaagcactttc 318  Q
    |||||||||||||| |||||||| | ||||| |||| | | ||||||| ||||| ||||||||||||||||           ||||  | |||| |||||    
T  24901898 cggcaagagcaaagccaacttcaaaagcttaaaaaccaaagcaaatgtcttgcacttatttgtttccacaagtattgcacaaagatccgaaagccctttc 24901997  T
Q  319 aactttgcaaattttggatcagattgaacatttttagcataattc 363  Q
    ||||||||||||||||||||||||| ||||||| || ||||||||    
T  24901998 aactttgcaaattttggatcagatttaacatttctaacataattc 24902042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 212 - 297
Target Start/End: Complemental strand, 2919948 - 2919863
Alignment:
Q  212 aacatttgtagtttctatcggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttcca 297  Q
    |||| ||| |||| ||| |||||||||||||  |||||||| | | | |||||| |||||||||||||||||||||||||||||||    
T  2919948 aacacttgcagttgctaccggcaagagcaaaaccaacttcaaaagttaataaaccataacaaatgtgttgcatttatttgtttcca 2919863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 230 - 362
Target Start/End: Original strand, 18817129 - 18817272
Alignment:
Q  230 cggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa-----------agatttggaagcactttc 318  Q
    |||||||||||||| |||||||| | ||||| |||| | | ||||||| ||||| ||||||||||||||||           ||||  | |||| |||||    
T  18817129 cggcaagagcaaagccaacttcaaaagcttaaaaaccaaagcaaatgtcttgcacttatttgtttccacaagtattgcacaaagatccgaaagccctttc 18817228  T
Q  319 aactttgcaaattttggatcagattgaacatttttagcataatt 362  Q
    ||||||||||||||||||||||||| ||||||| || |||||||    
T  18817229 aactttgcaaattttggatcagatttaacatttctaacataatt 18817272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 212 - 300
Target Start/End: Original strand, 6689395 - 6689483
Alignment:
Q  212 aacatttgtagtttctatcggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa 300  Q
    |||| ||| |||| ||| ||||||||||||||||||||||| | |||||||||  ||| ||||||||||| | |||||||||| |||||    
T  6689395 aacacttgcagttgctaccggcaagagcaaagtcaacttcaaaagcttataaatcatagcaaatgtgttgtacttatttgttttcacaa 6689483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 212 - 300
Target Start/End: Original strand, 21883456 - 21883544
Alignment:
Q  212 aacatttgtagtttctatcggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa 300  Q
    |||| ||| |||| ||| |||||||||||||| |||||||| | | |||||||| ||| ||||||||||| | ||||||||||||||||    
T  21883456 aacacttgcagttgctaccggcaagagcaaagccaacttcaaaagtttataaaccatagcaaatgtgttgtacttatttgtttccacaa 21883544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 212 - 295
Target Start/End: Complemental strand, 14607670 - 14607587
Alignment:
Q  212 aacatttgtagtttctatcggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttc 295  Q
    |||| ||| |||| ||| || |||||||||||||||||||| | | |||||||| |||||  |||||||||| |||||||||||    
T  14607670 aacacttgcagttgctaccgtcaagagcaaagtcaacttcaaaagtttataaaccataacttatgtgttgcacttatttgtttc 14607587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0535 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0535
Description:

Target: scaffold0535; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 234 - 295
Target Start/End: Original strand, 9895 - 9956
Alignment:
Q  234 aagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttc 295  Q
    ||||||||||||||||||| |  |||||||| |||||||||||||||||| |||||||||||    
T  9895 aagagcaaagtcaacttcaaaatcttataaaatataacaaatgtgttgcacttatttgtttc 9956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 230 - 362
Target Start/End: Complemental strand, 45486091 - 45485948
Alignment:
Q  230 cggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa-----------agatttggaagcactttc 318  Q
    |||||||||||||| |||||||| | ||||| |||| | | ||||||| ||||| ||||||||||||||||           ||||  | |||| |||||    
T  45486091 cggcaagagcaaagccaacttcaaaagcttaaaaaccaaagcaaatgtcttgcacttatttgtttccacaagtattgcacaaagatccgaaagccctttc 45485992  T
Q  319 aactttgcaaattttggatcagattgaacatttttagcataatt 362  Q
    ||||||||||||||||||||||||| ||||||| || |||||||    
T  45485991 aactttgcaaattttggatcagatttaacatttctaacataatt 45485948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 221 - 300
Target Start/End: Complemental strand, 24556802 - 24556723
Alignment:
Q  221 agtttctatcggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa 300  Q
    |||| ||| ||| |||||||||| |||||||| |  ||||||||| ||||||||||||||||| |||||||||| |||||    
T  24556802 agttgctaccggtaagagcaaagccaacttcaaaatcttataaaccataacaaatgtgttgcacttatttgttttcacaa 24556723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 314 - 374
Target Start/End: Complemental strand, 6802554 - 6802494
Alignment:
Q  314 ctttcaactttgcaaattttggatcagattgaacatttttagcataattcataagttgatg 374  Q
    ||||| |||| ||||||||||| ||||||||||||||| || |||||||| ||||||||||    
T  6802554 ctttcgacttggcaaattttgggtcagattgaacatttataacataattcctaagttgatg 6802494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 314 - 374
Target Start/End: Complemental strand, 32161186 - 32161126
Alignment:
Q  314 ctttcaactttgcaaattttggatcagattgaacatttttagcataattcataagttgatg 374  Q
    ||||||| || ||||||||||| ||||||||||||||| || |||||||| ||||||||||    
T  32161186 ctttcaatttagcaaattttgggtcagattgaacatttgtaacataattcttaagttgatg 32161126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 212 - 374
Target Start/End: Original strand, 2148580 - 2148753
Alignment:
Q  212 aacatttgtagtttctatcggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa----------- 300  Q
    |||||||| |||| ||| || ||||||||||| || ||||| | |||||||||  |||  |||||||||||| |||||||||| |||||               
T  2148580 aacatttgcagttgctaccgacaagagcaaagccagcttcaaaagcttataaatcatagaaaatgtgttgcacttatttgttttcacaagttttgcacaa 2148679  T
Q  301 agatttggaagcactttcaactttgcaaattttggatcagattgaacatttttagcataattcataagttgatg 374  Q
    |||| || |||| ||||  |||||||||||||||| ||||||| ||||||| || ||||||||  |||||||||    
T  2148680 agatctgaaagccctttacactttgcaaattttgggtcagatttaacatttataacataattctgaagttgatg 2148753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 299
Target Start/End: Complemental strand, 6802658 - 6802580
Alignment:
Q  221 agtttctatcggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccaca 299  Q
    |||| ||| |||| ||||||||  |||||||| | |||||||||  ||  ||||||||||||||||| |||||||||||    
T  6802658 agttgctaccggcgagagcaaaaccaacttcaaaagcttataaagcatttcaaatgtgttgcatttaattgtttccaca 6802580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 374
Target Start/End: Complemental strand, 24556703 - 24556638
Alignment:
Q  309 aagcactttcaactttgcaaattttggatcagattgaacatttttagcataattcataagttgatg 374  Q
    |||| |||||||||| |||||| |||  ||||||||||||||| || |||||||| ||| ||||||    
T  24556703 aagccctttcaacttagcaaatcttgagtcagattgaacatttataacataattcctaacttgatg 24556638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 300
Target Start/End: Original strand, 29866363 - 29866452
Alignment:
Q  211 aaacatttgtagtttctatcggcaagagcaaagtcaacttcacatgcttataaactataacaaatgtgttgcatttatttgtttccacaa 300  Q
    ||||| ||| |||| ||| |||||||| ||| ||||| |||| | | ||| |||  ||| |||||||||||| |||||||||||||||||    
T  29866363 aaacacttgcagttgctaccggcaagaacaaggtcaagttcaaaagtttagaaatcatagcaaatgtgttgcgtttatttgtttccacaa 29866452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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