View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13970_low_11 (Length: 359)
Name: NF13970_low_11
Description: NF13970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13970_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 11 - 341
Target Start/End: Original strand, 39243803 - 39244136
Alignment:
| Q |
11 |
cacagataccacaagatcaaccatgagtgacctgtcgttgaaaaaataaacattgagtgaactcaaaacgtgattaattaaaaatagttgacaagggaaa |
110 |
Q |
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| T |
39243803 |
cacagataccacaagatcaaccatgagtgacctgtcgttgaaaaaataaacattgagcgacctcaaa-cgtgattaattaaaaatagttgacaaggaaaa |
39243901 |
T |
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| Q |
111 |
agtaatgtaatttaaactgtgtagggatccaacatcaaaagttaacnnnnnnnngaa----gtacatacaaagttaatttattatttctagaggtgatac |
206 |
Q |
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| T |
39243902 |
agtaatgtaatttaaactgtgtagggatccaacatcaaaagttaacaaaaaaaaaaaaggagtacatacaaagttaatttattatttctagaggtgatac |
39244001 |
T |
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| Q |
207 |
gagaggtcactaccaccaattgtgttttgtgcattggaatgttcgttagctgtgtgttatggacaaaactttaacacataaattggcagtttgcaaagat |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39244002 |
gagaggtcactaccaccaattgtgttttgtgcattggaatgttcgttagctgtgtgttatggacaaaactttaacacataaattggcagtttgcaaagat |
39244101 |
T |
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| Q |
307 |
tttatggatataattgtcaaatagaaattcagact |
341 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
39244102 |
tttatggatataattgtcaaatagaaattcagact |
39244136 |
T |
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