View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13970_low_22 (Length: 229)

Name: NF13970_low_22
Description: NF13970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13970_low_22
NF13970_low_22
[»] chr4 (2 HSPs)
chr4 (7-229)||(13130084-13130306)
chr4 (168-229)||(40117939-40118000)
[»] chr7 (2 HSPs)
chr7 (124-229)||(20581033-20581138)
chr7 (152-225)||(13251116-13251189)
[»] chr3 (3 HSPs)
chr3 (127-229)||(8772134-8772236)
chr3 (126-229)||(13592287-13592390)
chr3 (142-229)||(19577683-19577770)
[»] chr2 (3 HSPs)
chr2 (59-229)||(25533803-25533973)
chr2 (10-56)||(32442394-32442440)
chr2 (141-229)||(32442530-32442618)
[»] chr1 (1 HSPs)
chr1 (151-229)||(18829015-18829093)


Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 13130084 - 13130306
Alignment:
Q  7 aaaccattaaaagtagtggaggatgcaatggtggaagcagacaagaccttagagacacaaaagaagactcacttgctgcaagagtcttggtgttccataa 106  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  13130084 aaaccattagaagtagtggaggatgcaatggtggaagcagacaagaccttagagacacaaaagaagactcacttgctgcaagagtcttggtgttccgtaa 13130183  T
Q  107 ggaggacaagcacatactctgaaatccttatgatgggagcatgtgaacacttacttctccttgccaaattcatggagttccttttgaacaagagaaagat 206  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13130184 ggaggacaagcacataccctgaaatccttatgatgggagcatgtgaacacttacttctccttgccaaattcatggagttccttttgaacaagagaaagat 13130283  T
Q  207 gaaggatgatgtgttctttcttt 229  Q
    |||||||||||||||||||||||    
T  13130284 gaaggatgatgtgttctttcttt 13130306  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 40118000 - 40117939
Alignment:
Q  168 tgccaaattcatggagttccttttgaacaagagaaagatgaaggatgatgtgttctttcttt 229  Q
    ||||||||||||||| ||||| || |||||||| || | |||||| ||||||||||||||||    
T  40118000 tgccaaattcatggaattcctgttaaacaagaggaaaaggaaggaggatgtgttctttcttt 40117939  T

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Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 124 - 229
Target Start/End: Complemental strand, 20581138 - 20581033
Alignment:
Q  124 tctgaaatccttatgatgggagcatgtgaacacttacttctccttgccaaattcatggagttccttttgaacaagagaaagatgaaggatgatgtgttct 223  Q
    |||||||||||| |||||| || ||||||||||||||  |||  || |||||||||||||||||||  |||||||||||||| ||||| |||||||||||    
T  20581138 tctgaaatccttttgatggaaggatgtgaacacttaccactctatgtcaaattcatggagttccttccgaacaagagaaagaggaaggttgatgtgttct 20581039  T
Q  224 ttcttt 229  Q
    ||||||    
T  20581038 ttcttt 20581033  T

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Target: chr7; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 152 - 225
Target Start/End: Original strand, 13251116 - 13251189
Alignment:
Q  152 aacacttacttctccttgccaaattcatggagttccttttgaacaagagaaagatgaaggatgatgtgttcttt 225  Q
    |||||||| |||||||||| ||||||||||||||||||   ||||||||||||| |||||||||||||||||||    
T  13251116 aacacttaattctccttgcaaaattcatggagttccttccaaacaagagaaagaggaaggatgatgtgttcttt 13251189  T

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Target: chr3 (Bit Score: 55; Significance: 9e-23; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 127 - 229
Target Start/End: Complemental strand, 8772236 - 8772134
Alignment:
Q  127 gaaatccttatgatgggagcatgtgaacacttacttctccttgccaaattcatggagttccttttgaacaagagaaagatgaaggatgatgtgttctttc 226  Q
    ||||||||  ||||||||||||||||||||||||  |||  ||||||| ||||||||||||||   ||||||||||||| ||| ||||||||||||||||    
T  8772236 gaaatcctactgatgggagcatgtgaacacttaccactctatgccaaactcatggagttccttccaaacaagagaaagaggaaagatgatgtgttctttc 8772137  T
Q  227 ttt 229  Q
    |||    
T  8772136 ttt 8772134  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 126 - 229
Target Start/End: Complemental strand, 13592390 - 13592287
Alignment:
Q  126 tgaaatccttatgatgggagcatgtgaacacttacttctccttgccaaattcatggagttccttttgaacaagagaaagatgaaggatgatgtgttcttt 225  Q
    |||||||||| |||| |||| |||| |||||||||  |||  ||||||||||||||||||||||  |||||||||||| | | |||||||||||||||||    
T  13592390 tgaaatccttttgataggaggatgttaacacttaccactctatgccaaattcatggagttccttccgaacaagagaaaaagggaggatgatgtgttcttt 13592291  T
Q  226 cttt 229  Q
    ||||    
T  13592290 cttt 13592287  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 229
Target Start/End: Original strand, 19577683 - 19577770
Alignment:
Q  142 ggagcatgtgaacacttacttctccttgccaaattcatggagttccttttgaacaagagaaagatgaaggatgatgtgttctttcttt 229  Q
    |||||||| ||||||||| |||| |||   || ||||||||||||||    ||||||||||||| |||||||  ||||||||||||||    
T  19577683 ggagcatgggaacacttaattcttcttaaaaagttcatggagttcctccctaacaagagaaagaagaaggattgtgtgttctttcttt 19577770  T

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Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 59 - 229
Target Start/End: Complemental strand, 25533973 - 25533803
Alignment:
Q  59 agacacaaaagaagactcacttgctgcaagagtcttggtgttccataaggaggacaagcacatactctgaaatccttatgatgggagcatgtgaacactt 158  Q
    |||| ||||| ||||||||||||||||||||||||  ||||    |||||||||  |||||||| ||   ||   | | ||| |||||||| ||||||||    
T  25533973 agactcaaaataagactcacttgctgcaagagtctcagtgtcagttaaggaggatgagcacatattccagaaaagtaaagattggagcatgggaacactt 25533874  T
Q  159 acttctccttgccaaattcatggagttccttttgaacaagagaaagatgaaggatgatgtgttctttcttt 229  Q
    | |||| ||| | || |||||| ||||||||   ||||||||||||| |||||||||||||||||||||||    
T  25533873 aattcttcttacaaagttcatgaagttccttcctaacaagagaaagaagaaggatgatgtgttctttcttt 25533803  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 56
Target Start/End: Original strand, 32442394 - 32442440
Alignment:
Q  10 ccattaaaagtagtggaggatgcaatggtggaagcagacaagacctt 56  Q
    |||||| ||||||||||||||||||||||||||| ||||||||||||    
T  32442394 ccattagaagtagtggaggatgcaatggtggaagaagacaagacctt 32442440  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 229
Target Start/End: Original strand, 32442530 - 32442618
Alignment:
Q  141 gggagcatgtgaacacttacttctccttgccaaattcatggagttccttttgaacaaga-gaaagatgaaggatgatgtgttctttcttt 229  Q
    |||||||||||||||||||  ||||  |||||||||||||||  |||||   ||||| | |||||| |||||||||||||||||||||||    
T  32442530 gggagcatgtgaacacttatatctctatgccaaattcatggacatccttccaaacaacaggaaaga-gaaggatgatgtgttctttcttt 32442618  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 151 - 229
Target Start/End: Complemental strand, 18829093 - 18829015
Alignment:
Q  151 gaacacttacttctccttgccaaattcatggagttccttttgaacaagagaaagatgaaggatgatgtgttctttcttt 229  Q
    ||||||||| |||||||| | || |||||||||||||||  |||||||||||||| ||||| ||||||||| |||||||    
T  18829093 gaacacttaattctccttacaaagttcatggagttccttcggaacaagagaaagaggaagggtgatgtgttatttcttt 18829015  T

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