View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13970_low_3 (Length: 551)
Name: NF13970_low_3
Description: NF13970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13970_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 524; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 20 - 543
Target Start/End: Complemental strand, 45595802 - 45595279
Alignment:
| Q |
20 |
agggccaaagggtattgtcccttaactccaaaggaagttggaattttccttagtgctcttggataccctgcaaagactccaatatatattgctgcagggg |
119 |
Q |
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| T |
45595802 |
agggccaaagggtattgtcccttaactccaaaggaagttggaattttccttagtgctcttggataccctgcaaagactccaatatatattgctgcagggg |
45595703 |
T |
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| Q |
120 |
agatatatgggggtgaatcccatatgactgaattgcgatcacgctatccctttttaatgagcaaggttagaaattacaagactttattgttgtttcttgg |
219 |
Q |
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| T |
45595702 |
agatatatgggggtgaatcccatatgactgaattgcgatcacgctatccctttttaatgagcaaggttagaaattacaagactttattgttgtttcttgg |
45595603 |
T |
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| Q |
220 |
tgaatgaagattgataaagcattgtttgaactggtttcttatttaatctacatgtaactaatatcaggaaaagttggcatctattgaagagcttgaacca |
319 |
Q |
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| T |
45595602 |
tgaatgaagattgataaagcattgtttgaactggtttcttatttaatctacatgtaactaatatcaggaaaagttggcatctattgaagagcttgaacca |
45595503 |
T |
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| Q |
320 |
ttttctaatcatgcgtcgcaaatggctgctcttgactatattgtatctgttgaaagtgatgtatttgtacattcttaccctggcaacatggcgcgagcgg |
419 |
Q |
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| T |
45595502 |
ttttctaatcatgcgtcgcaaatggctgctcttgactatattgtatctgttgaaagtgatgtatttgtacattcttaccctggcaacatggcgcgagcgg |
45595403 |
T |
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| Q |
420 |
ttgaaggccatcgtcgttttcttgggagaggaagaaccatttctccagataggtgagcctctctttctctcctaagcagatgaattaattttgtaattca |
519 |
Q |
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| T |
45595402 |
ttgaaggccatcgtcgttttcttgggagaggaagaaccatttctccagataggtgagcctctctttctctcctaagcagatgaattaattttgtaattca |
45595303 |
T |
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| Q |
520 |
ttatccctaatgtttgcctttgct |
543 |
Q |
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| T |
45595302 |
ttatccctaatgtttgcctttgct |
45595279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 5e-39; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 24 - 186
Target Start/End: Complemental strand, 27151497 - 27151335
Alignment:
| Q |
24 |
ccaaagggtattgtcccttaactccaaaggaagttggaattttccttagtgctcttggataccctgcaaagactccaatatatattgctgcaggggagat |
123 |
Q |
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| T |
27151497 |
ccaaagggttttgccccttaacaccaaaggaagttggaatttttcttactgctcttggatatccatcaaagacgccgatatatattgctgctggagagat |
27151398 |
T |
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| Q |
124 |
atatgggggtgaatcccatatgactgaattgcgatcacgctatccctttttaatgagcaaggt |
186 |
Q |
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| T |
27151397 |
ttatgggggtgagtcccatatggctgaactgcgatcccgttatccattgttaatgagcaaggt |
27151335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 278 - 444
Target Start/End: Complemental strand, 27149117 - 27148951
Alignment:
| Q |
278 |
taatatcaggaaaagttggcatctattgaagagcttgaaccattttctaatcatgcgtcgcaaatggctgctcttgactatattgtatctgttgaaagtg |
377 |
Q |
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|||| |||||||| ||||||||| ||||| ||||||||||| |||| ||||||||| || |||||||||||||||||||||||||||||| | || |||| |
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| T |
27149117 |
taatttcaggaaacgttggcatccattgaggagcttgaacccttttttaatcatgcttctcaaatggctgctcttgactatattgtatctatcgagagtg |
27149018 |
T |
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| Q |
378 |
atgtatttgtacattcttaccctggcaacatggcgcgagcggttgaaggccatcgtcgttttcttgg |
444 |
Q |
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| T |
27149017 |
atgtatttataccctcttattctggaaacatggcaagggctgttgaaggtcatcgccgttttcttgg |
27148951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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